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AT1G43710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.641
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:22318864 (2012): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 1075 (emb1075); FUNCTIONS IN: pyridoxal phosphate binding, carboxy-lyase activity, catalytic activity; INVOLVED IN: cellular amino acid metabolic process, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent decarboxylase (InterPro:IPR002129), Pyridoxal-phosphate binding site (InterPro:IPR021115), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: glutamate decarboxylase 2 (TAIR:AT1G65960.1); Has 3259 Blast hits to 3251 proteins in 995 species: Archae - 187; Bacteria - 1878; Metazoa - 518; Fungi - 211; Plants - 249; Viruses - 11; Other Eukaryotes - 205 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G43710-MONOMEREC:4.1.1.-eggNOG:COG0076eggNOG:KOG0629
EMBL:AB030379EMBL:AB036933EMBL:AC009526EMBL:AF360233
EMBL:AF389349EMBL:AY040033EMBL:CP002684EnsemblPlants:AT1G43710
EnsemblPlants:AT1G43710.1entrez:840958Gene3D:3.40.640.10GeneID:840958
Genevisible:Q9MA74GO:GO:0005829GO:GO:0005886GO:GO:0006580
GO:GO:0016831GO:GO:0019752GO:GO:0030170Gramene:AT1G43710.1
hmmpanther:PTHR11999hmmpanther:PTHR11999:SF83HOGENOM:HOG000239145InParanoid:Q9MA74
InterPro:IPR002129InterPro:IPR015421InterPro:IPR015424InterPro:IPR021115
iPTMnet:Q9MA74KEGG:ath:AT1G43710KO:K01590OMA:PPCLAKD
PaxDb:Q9MA74Pfam:PF00282Pfam:Q9MA74PhylomeDB:Q9MA74
PIR:E96500PRIDE:Q9MA74PRO:PR:Q9MA74PROSITE:PS00392
ProteinModelPortal:Q9MA74Proteomes:UP000006548RefSeq:NP_175036.1scanprosite:PS00392
SMR:Q9MA74STRING:3702.AT1G43710.1SUPFAM:SSF53383TAIR:AT1G43710
tair10-symbols:emb1075UniGene:At.21345UniProt:Q9MA74
Coordinates (TAIR10) chr1:-:16486534..16488298
Molecular Weight (calculated) 54079.90 Da
IEP (calculated) 6.12
GRAVY (calculated) -0.26
Length 482 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGSLESDQT LSMATLIEKL DILSDDFDPT AVVTEPLPPP VTNGIGADKG GGGGEREMVL GRNIHTTSLA VTEPEVNDEF TGDKEAYMAS VLARYRKTLV
101: ERTKNHLGYP YNLDFDYGAL GQLQHFSINN LGDPFIESNY GVHSRPFEVG VLDWFARLWE IERDDYWGYI TNCGTEGNLH GILVGREMFP DGILYASRES
201: HYSVFKAARM YRMECEKVDT LMSGEIDCDD LRKKLLANKD KPAILNVNIG TTVKGAVDDL DLVIKTLEEC GFSHDRFYIH CDGALFGLMM PFVKRAPKVT
301: FNKPIGSVSV SGHKFVGCPM PCGVQITRME HIKVLSSNVE YLASRDATIM GSRNGHAPLF LWYTLNRKGY KGFQKEVQKC LRNAHYLKDR LREAGISAML
401: NELSSTVVFE RPKDEEFVRR WQLACQGDIA HVVVMPSVTI EKLDNFLKDL VKHRLIWYED GSQPPCLASE VGTNNCICPA HK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)