suba logo
AT1G43700.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : VIRE2-interacting protein 1
Curator
Summary (TAIR10)
Encodes a VirE2-interacting protein. VIP1 mediates nuclear translocation of VirE2 via its amino half, and interacts with histone H2A via it carboxyl half.
Computational
Description (TAIR10)
VIRE2-interacting protein 1 (VIP1); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: cellular response to sulfate starvation, sulfate transport, DNA mediated transformation, nuclear import; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), Basic leucine zipper (InterPro:IPR011700); BEST Arabidopsis thaliana protein match is: Basic-leucine zipper (bZIP) transcription factor family protein (TAIR:AT1G06070.1); Has 1450 Blast hits to 1450 proteins in 153 species: Archae - 0; Bacteria - 51; Metazoa - 59; Fungi - 47; Plants - 1254; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Protein Annotations
BioGrid:26182eggNOG:ENOG410IH5NeggNOG:ENOG410YA2SEMBL:AC009526EMBL:AF225983EMBL:AY065453EMBL:AY085857
EMBL:AY117284EMBL:CP002684EnsemblPlants:AT1G43700EnsemblPlants:AT1G43700.1entrez:840957GeneID:840957Genevisible:Q9MA75
GO:GO:0003700GO:GO:0005634GO:GO:0005829GO:GO:0006351GO:GO:0006952GO:GO:0007231GO:GO:0008272
GO:GO:0009294GO:GO:0009970GO:GO:0043565GO:GO:0045596GO:GO:0051019GO:GO:0051170Gramene:AT1G43700.1
hmmpanther:PTHR13690hmmpanther:PTHR13690:SF86HOGENOM:HOG000239687InParanoid:Q9MA75IntAct:Q9MA75InterPro:IPR004827iPTMnet:Q9MA75
KEGG:ath:AT1G43700ncoils:CoilOMA:IPQGNGNPaxDb:Q9MA75Pfam:PF00170Pfam:Q9MA75Pfscan:PS50217
PhylomeDB:Q9MA75PIR:D96500PRIDE:Q9MA75PRO:PR:Q9MA75PROSITE:PS50217ProteinModelPortal:Q9MA75Proteomes:UP000006548
RefSeq:NP_564486.1SMART:SM00338SMR:Q9MA75STRING:3702.AT1G43700.1SUPFAM:SSF57959TAIR:AT1G43700tair10-symbols:SUE3
tair10-symbols:VIP1UniGene:At.22614UniGene:At.24245UniProt:Q9MA75
Coordinates (TAIR10) chr1:+:16484352..16486017
Molecular Weight (calculated) 37793.10 Da
IEP (calculated) 7.33
GRAVY (calculated) -0.88
Length 341 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGGGRGPNQ TILSEIEHMP EAPRQRISHH RRARSETFFS GESIDDLLLF DPSDIDFSSL DFLNAPPPPQ QSQQQPQASP MSVDSEETSS NGVVPPNSLP
101: PKPEARFGRH VRSFSVDSDF FDDLGVTEEK FIATSSGEKK KGNHHHSRSN SMDGEMSSAS FNIESILASV SGKDSGKKNM GMGGDRLAEL ALLDPKRAKR
201: ILANRQSAAR SKERKIRYTG ELERKVQTLQ NEATTLSAQV TMLQRGTSEL NTENKHLKMR LQALEQQAEL RDALNEALRD ELNRLKVVAG EIPQGNGNSY
301: NRAQFSSQQS AMNQFGNKTN QQMSTNGQPS LPSYMDFTKR G
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)