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AT1G43560.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : thioredoxin Y2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
thioredoxin Y2 (ty2); FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: glycerol ether metabolic process, cell redox homeostasis; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin Y1 (TAIR:AT1G76760.1); Has 23180 Blast hits to 21538 proteins in 3021 species: Archae - 298; Bacteria - 11849; Metazoa - 3466; Fungi - 1262; Plants - 2020; Viruses - 15; Other Eukaryotes - 4270 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0526eggNOG:KOG0910EMBL:AC007203EMBL:AY128276EMBL:BT014871EMBL:CP002684EnsemblPlants:AT1G43560
EnsemblPlants:AT1G43560.1entrez:840939Gene3D:3.40.30.10GeneID:840939Genevisible:Q8L7S9GO:GO:0000103GO:GO:0006457
GO:GO:0006662GO:GO:0008047GO:GO:0009416GO:GO:0009507GO:GO:0009570GO:GO:0015035GO:GO:0016671
GO:GO:0034599GO:GO:0043085GO:GO:0045454Gramene:AT1G43560.1hmmpanther:PTHR10438hmmpanther:PTHR10438:SF280HOGENOM:HOG000292977
InParanoid:Q8L7S9IntAct:Q8L7S9InterPro:IPR005746InterPro:IPR012336InterPro:IPR013766InterPro:IPR017937KEGG:ath:AT1G43560
OMA:KKQTFNSPANTHER:PTHR10438PaxDb:Q8L7S9Pfam:PF00085Pfam:Q8L7S9Pfscan:PS51352PhylomeDB:Q8L7S9
PIR:A96499PRIDE:Q8L7S9PRO:PR:Q8L7S9PROSITE:PS00194PROSITE:PS51352ProteinModelPortal:Q8L7S9Proteomes:UP000006548
RefSeq:NP_175021.2scanprosite:PS00194SMR:Q8L7S9STRING:3702.AT1G43560.1SUPFAM:SSF52833TAIR:AT1G43560tair10-symbols:Aty2
tair10-symbols:ty2TIGRfam:TIGR01068TIGRFAMs:TIGR01068UniGene:At.38981UniProt:Q8L7S9
Coordinates (TAIR10) chr1:-:16398359..16399828
Molecular Weight (calculated) 18593.30 Da
IEP (calculated) 8.47
GRAVY (calculated) -0.13
Length 167 amino acids
Sequence (TAIR10)
(BLAST)
001: MAISLATAYI SPCFTPESSN SASPSRTLSS VRLPSQIRRF GSVQSPSSST RFAPLTVRAA KKQTFNSFDD LLQNSDKPVL VDFYATWCGP CQLMVPILNE
101: VSETLKDIIA VVKIDTEKYP SLANKYQIEA LPTFILFKDG KLWDRFEGAL PANQLVERIE NSLQVKQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)