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AT1G42970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25740923 (2015): plastid
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18433418 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16923014 (2006): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : glyceraldehyde-3-phosphate dehydrogenase B subunit
Curator
Summary (TAIR10)
Encodes chloroplast localized glyceraldehyde-3-phosphate dehydrogenase that can use both NADH and NADPH to reduce 1,3-diphosphate glycerate. It forms A2B2 heterotetramers with GapA forms of the GADPH enzyme. These complexes are active in the light under reducing conditions, but show reduced NADPH-dependent activity in response to oxidized thioredoxins and increased NAD(H)/NADP(H) ratios due to the formation of inactive A8B8 hexadecamers.
Computational
Description (TAIR10)
glyceraldehyde-3-phosphate dehydrogenase B subunit (GAPB); FUNCTIONS IN: glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity, glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity, glyceraldehyde-3-phosphate dehydrogenase activity; INVOLVED IN: in 6 processes; LOCATED IN: in 7 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glyceraldehyde 3-phosphate dehydrogenase subfamily (InterPro:IPR000173), Glyceraldehyde-3-phosphate dehydrogenase, type I (InterPro:IPR006424), Glyceraldehyde 3-phosphate dehydrogenase, active site (InterPro:IPR020830), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (InterPro:IPR020829), Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain, subgroup (InterPro:IPR020832), Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (InterPro:IPR020828), Protein of unknown function CP12 (InterPro:IPR003823); BEST Arabidopsis thaliana protein match is: glyceraldehyde 3-phosphate dehydrogenase A subunit (TAIR:AT3G26650.1); Has 24904 Blast hits to 24897 proteins in 6198 species: Archae - 41; Bacteria - 10859; Metazoa - 2228; Fungi - 2814; Plants - 3753; Viruses - 0; Other Eukaryotes - 5209 (source: NCBI BLink).
Protein Annotations
BioGrid:26120BRENDA:1.2.1.13EC:1.2.1.13eggNOG:COG0057eggNOG:KOG0657EMBL:AC068324EMBL:AK230314
EMBL:AY039539EMBL:AY039961EMBL:AY079402EMBL:AY095991EMBL:AY140091EMBL:BT002267EMBL:CP002684
EMBL:M64115EMBL:M64118EnsemblPlants:AT1G42970EnsemblPlants:AT1G42970.1entrez:840895Gene3D:3.40.50.720GeneID:840895
Genevisible:P25857GO:GO:0004365GO:GO:0006006GO:GO:0009409GO:GO:0009416GO:GO:0009507GO:GO:0009535
GO:GO:0009570GO:GO:0009744GO:GO:0009941GO:GO:0010319GO:GO:0016020GO:GO:0019253GO:GO:0031969
GO:GO:0046686GO:GO:0047100GO:GO:0048046GO:GO:0050661GO:GO:0051287Gramene:AT1G42970.1gramene_pathway:1.2.1.13
gramene_pathway:CALVIN-PWYHOGENOM:HOG000071678InParanoid:P25857IntAct:P25857InterPro:IPR003823InterPro:IPR006424InterPro:IPR016040
InterPro:IPR020828InterPro:IPR020829InterPro:IPR020830InterPro:IPR020831iPTMnet:P25857KEGG:00010+1.2.1.12KEGG:00710+1.2.1.12
KEGG:ath:AT1G42970KO:K05298OMA:GIENGFMPaxDb:P25857Pfam:P25857Pfam:PF00044Pfam:PF02672
Pfam:PF02800PhylomeDB:P25857PIR:C96497PIR:JQ1286PRIDE:P25857PRINTS:PR00078PRO:PR:P25857
PROSITE:PS00071ProteinModelPortal:P25857Proteomes:UP000006548RefSeq:NP_174996.1scanprosite:PS00071SMART:SM00846SMR:P25857
STRING:3702.AT1G42970.1SUPFAM:SSF51735SUPFAM:SSF55347SWISS-2DPAGE:P25857TAIR:AT1G42970tair10-symbols:GAPBTIGRfam:TIGR01534
TIGRFAMs:TIGR01534UniGene:At.21749UniGene:At.67261unipathway:UPA00109UniPathway:UPA00116UniProt:P25857
Coordinates (TAIR10) chr1:+:16127552..16129584
Molecular Weight (calculated) 47662.20 Da
IEP (calculated) 6.78
GRAVY (calculated) 0.00
Length 447 amino acids
Sequence (TAIR10)
(BLAST)
001: MATHAALAVS RIPVTQRLQS KSAIHSFPAQ CSSKRLEVAE FSGLRMSSIG GEASFFDAVA AQIIPKAVTT STPVRGETVA KLKVAINGFG RIGRNFLRCW
101: HGRKDSPLEV VVLNDSGGVK NASHLLKYDS MLGTFKAEVK IVDNETISVD GKLIKVVSNR DPLKLPWAEL GIDIVIEGTG VFVDGPGAGK HIQAGASKVI
201: ITAPAKGADI PTYVMGVNEQ DYGHDVANII SNASCTTNCL APFAKVLDEE FGIVKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVS
301: LVLPQLKGKL NGIALRVPTP NVSVVDLVIN VEKKGLTAED VNEAFRKAAN GPMKGILDVC DAPLVSVDFR CSDVSTTIDS SLTMVMGDDM VKVVAWYDNE
401: WGYSQRVVDL AHLVASKWPG AEAVGSGDPL EDFCKTNPAD EECKVYD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)