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AT1G42710.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.987
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : General transcription factor 2-related zinc finger protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
General transcription factor 2-related zinc finger protein; BEST Arabidopsis thaliana protein match is: TTF-type zinc finger protein with HAT dimerisation domain (TAIR:AT2G06541.1); Has 313 Blast hits to 300 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 83; Fungi - 0; Plants - 230; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC035249EMBL:CP002684EnsemblPlants:AT1G42710EnsemblPlants:AT1G42710.1
entrez:840883GeneID:840883Gramene:AT1G42710.1hmmpanther:PTHR11697
hmmpanther:PTHR11697:SF110InterPro:IPR025398KEGG:ath:AT1G42710Pfam:PF14291
PhylomeDB:Q9C842Proteomes:UP000006548RefSeq:NP_174994.1TAIR:AT1G42710
UniGene:At.52002UniProt:Q9C842
Coordinates (TAIR10) chr1:-:16077592..16078567
Molecular Weight (calculated) 23204.90 Da
IEP (calculated) 9.21
GRAVY (calculated) -0.30
Length 206 amino acids
Sequence (TAIR10)
(BLAST)
001: MMSNALRRFD PAWFEKYDGI IKHERLGTHV GKPNSSHNYA IEKCVNLMNQ GQSIVHALFK QDDVMKREYH IPLNTSIDAS RYLLRQGIAF HGHDESEESA
101: NKGNFLELVK YTGEQNDATE QMAVVFRFVD KSGTVKERFI EVVHVKETSS ASVKSAIDDL FAKYGLSLKT VRGQGYDGAS IMKVAKGVAK SFDLLSLLLK
201: IIVVYK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)