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AT1G42540.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : glutamate receptor 3.3
Curator
Summary (TAIR10)
member of Putative ligand-gated ion channel subunit family
Computational
Description (TAIR10)
glutamate receptor 3.3 (GLR3.3); FUNCTIONS IN: intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), GPCR, family 3, gamma-aminobutyric acid receptor, type B (InterPro:IPR002455), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 3.6 (TAIR:AT3G51480.1); Has 6567 Blast hits to 6430 proteins in 489 species: Archae - 28; Bacteria - 758; Metazoa - 4571; Fungi - 0; Plants - 644; Viruses - 2; Other Eukaryotes - 564 (source: NCBI BLink).
Protein Annotations
BioGrid:26087eggNOG:ENOG410ISR9eggNOG:ENOG410YYDDEMBL:AC025815
EMBL:CP002684EnsemblPlants:AT1G42540EnsemblPlants:AT1G42540.1entrez:840859
GeneID:840859Genevisible:Q9C8E7GO:GO:0004970GO:GO:0005262
GO:GO:0005622GO:GO:0005886GO:GO:0006816GO:GO:0008066
GO:GO:0009611GO:GO:0009630GO:GO:0009864GO:GO:0016021
GO:GO:0019722GO:GO:0045087GO:GO:0050832GO:GO:0070588
GO:GO:0071230Gramene:AT1G42540.1hmmpanther:PTHR18966hmmpanther:PTHR18966:SF222
HOGENOM:HOG000239558InParanoid:Q9C8E7InterPro:IPR001320InterPro:IPR001638
InterPro:IPR001828InterPro:IPR017103InterPro:IPR028082KEGG:ath:AT1G42540
KO:K05387OMA:QIRGTENPaxDb:Q9C8E7Pfam:PF00060
Pfam:PF00497Pfam:PF01094Pfam:Q9C8E7PhylomeDB:Q9C8E7
PIR:C96495PIRSF:PIRSF037090PRIDE:Q9C8E7PRO:PR:Q9C8E7
ProteinModelPortal:Q9C8E7Proteomes:UP000006548RefSeq:NP_174978.1SMART:SM00079
SMR:Q9C8E7STRING:3702.AT1G42540.1SUPFAM:SSF53822SUPFAM:SSF53850
TAIR:AT1G42540tair10-symbols:ATGLR3.3tair10-symbols:GLR3.3TCDB:1.A.10.1.10
TMHMM:TMhelixUniGene:At.39090UniProt:Q9C8E7
Coordinates (TAIR10) chr1:+:15973489..15976703
Molecular Weight (calculated) 104695.00 Da
IEP (calculated) 9.02
GRAVY (calculated) -0.04
Length 933 amino acids
Sequence (TAIR10)
(BLAST)
001: MKQLWTFFFL SFLCSGLFRR THSEKPKVVK IGSIFSFDSV IGKVAKIAID EAVKDVNSNP DILSGTKFSV SMQNSNCSGF MGMVEALRFM EKDIVGIIGP
101: QCSVVAHMIS HMANELRVPL LSFAVTDPVM SPLQFPYFIR TTQSDLYQMD AIASIVDFYG WKEVIAVFVD DDFGRNGVAA LNDKLASRRL RITYKAGLHP
201: DTAVNKNEIM NMLIKIMLLQ PRIVVIHVYS ELGFAVFKEA KYLGMMGNGY VWIATDWLST NLDSSSPLPA ERLETIQGVL VLRPHTPDSD FKREFFKRWR
301: KMSGASLALN TYGLYAYDSV MLLARGLDKF FKDGGNISFS NHSMLNTLGK SGNLNLEAMT VFDGGEALLK DILGTRMVGL TGQLQFTPDR SRTRPAYDII
401: NVAGTGVRQI GYWSNHSGLS TVLPELLYTK EKPNMSTSPK LKHVIWPGET FTKPRGWVFS NNGKELKIGV PLRVSYKEFV SQIRGTENMF KGFCIDVFTA
501: AVNLLPYAVP VKFIPYGNGK ENPSYTHMVE MITTGNFDGV VGDVAIVTNR TKIVDFTQPY AASGLVVVAP FKKLNSGAWA FLRPFNRLMW AVTGCCFLFV
601: GIVVWILEHR TNDEFRGPPK RQCVTILWFS FSTMFFAHRE NTVSTLGRLV LIIWLFVVLI INSSYTASLT SILTVQQLSS PIKGIESLRE RDDPIGYQVG
701: SFAESYLRNE LNISESRLVP LGTPEAYAKA LKDGPSKGGV AAIVDERPYV ELFLSSNCAY RIVGQEFTKS GWGFAFPRDS PLAIDLSTAI LELAENGDLQ
801: RIHDKWLMKN ACTLENAELE SDRLHLKSFW GLFLICGVAC LLALFLYFVQ IIRQLYKKPT DDAIARDQQQ NHDSSSMRST RLQRFLSLMD EKEESKHESK
901: KRKIDGSMND TSGSTRSRGF DRERSFNSVN PLD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)