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AT1G41820.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 46 Blast hits to 46 proteins in 21 species: Archae - 0; Bacteria - 6; Metazoa - 8; Fungi - 2; Plants - 5; Viruses - 1; Other Eukaryotes - 24 (source: NCBI BLink).
Protein Annotations
EMBL:AC022456EMBL:CP002684EnsemblPlants:AT1G41820EnsemblPlants:AT1G41820.1
entrez:840790GeneID:840790Gramene:AT1G41820.1KEGG:ath:AT1G41820
ncoils:CoilPIR:A96492Proteomes:UP000006548RefSeq:NP_174946.1
TAIR:AT1G41820UniGene:At.51995UniProt:Q9C8Q4
Coordinates (TAIR10) chr1:-:15582423..15585143
Molecular Weight (calculated) 46531.20 Da
IEP (calculated) 7.16
GRAVY (calculated) -0.87
Length 401 amino acids
Sequence (TAIR10)
(BLAST)
001: MTIPEHHPEL EPAEQLVAEE QALAEPRRQM TRMVTSKSSS GVSVNDQAII DAITLQMEKI IDAKHKPIND QLKGIEQYEQ ISHQKEAKPN RPQEKHNWRS
101: RPTKDESNCY YYIRDDHRRF EQARQQPNDV KEVKTMKQNR KESLSSNEQL KDELLMILNA YNKLKKAKHP LPSNSKKAKI ALPSEFTKDT CDLYEKTDFV
201: LEIIKLVLEE RSQKEGQRSL SSIVTDLEQQ TISITEPILK ELFGFSRTFN VFPLVFVKDN EKPVKDAILN IRKSYGFPNP FDYGSKEDMD QAWSEMKASK
301: ASEARTHLFG VWNWKYLRKT TTIAKGCSTL KYYFANGEHD MTIPEHHPKL EPAEQLIAEE QLGAEEQHVV EEALAEPRRQ MTRSKTKLLN QAISDYPNTW
401: T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)