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AT1G37020.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.987
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Cysteine proteinases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Ulp1 protease family protein (TAIR:AT5G45570.1); Has 315 Blast hits to 281 proteins in 53 species: Archae - 2; Bacteria - 21; Metazoa - 20; Fungi - 17; Plants - 180; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Protein Annotations
EMBL:CP002684EnsemblPlants:AT1G37020EnsemblPlants:AT1G37020.1entrez:840613
GeneID:840613GO:GO:0008234Gramene:AT1G37020.1hmmpanther:PTHR31470
hmmpanther:PTHR31470:SF13InParanoid:F4I3A8InterPro:IPR003653KEGG:ath:AT1G37020
ncoils:CoilPaxDb:F4I3A8Pfam:PF02902Pfscan:PS50600
PRIDE:F4I3A8PROSITE:PS50600ProteinModelPortal:F4I3A8Proteomes:UP000006548
RefSeq:NP_174894.1SUPFAM:SSF54001TAIR:AT1G37020UniGene:At.51985
UniProt:F4I3A8
Coordinates (TAIR10) chr1:+:14046735..14049742
Molecular Weight (calculated) 70551.30 Da
IEP (calculated) 6.66
GRAVY (calculated) -0.59
Length 611 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFNCDLIDK SATCEAGHHE FWNEMDVGTS EGPLFTKLEC VMDISKEWSY EKRLMVESFE KYPWGRFAIE SLVSSVKIID YKKNSYGIHG CVYALWIWIY
101: ESMPGLREIY GFRRATTNGV ALLDWRSSRA RIKFKKFIET EKVAHEEVRH MLPDSLENMY PKWSDLPENQ DMTLDNLIRD IIHNRLRNNA WKHEKNGNES
201: TPIDDERAEL SKRLAAVEND LKALKESHPA DVSINDVTSN NKGDDATFNN DKEDETPNKE LELQLKIKDA TKGKKKKVAI MPKKASKIPK KKMAKVKEMK
301: VSTPKVLKKT MRRDDDYVGD VTEKVVADTL KMACSFEDTF SNPHVQRASE AMAIVLSSIE DQIKNLNDGK STVKRIITDG APSPSIPEHL QPVSDEKLHS
401: LMDWLGLMIL IRKMKNDYNK HYSSDFKTYN WTGYYVNHLN GTSHTDAATN NKWFTNVDHL YGCLFVNENH WVALDFNLKT NRIYVYDSIP TPVEELEMVQ
501: QCMFLRKIIP TMLSEYILEK DHKKSYAMLE VKRVTKKNPV NDDRGDCAIY AIKYIECLAL GKSFDGLCDR NMQALWINLG VEMFDELGEF VGTLNCETRQ
601: KEFEIPRLND S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)