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AT1G36390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Co-chaperone GrpE family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Co-chaperone GrpE family protein; FUNCTIONS IN: copper ion binding; INVOLVED IN: protein folding, protein import into mitochondrial matrix; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GrpE nucleotide exchange factor (InterPro:IPR000740), GrpE nucleotide exchange factor, coiled-coil (InterPro:IPR013805), GrpE nucleotide exchange factor, head (InterPro:IPR009012); BEST Arabidopsis thaliana protein match is: Co-chaperone GrpE family protein (TAIR:AT5G17710.2); Has 7907 Blast hits to 7907 proteins in 2666 species: Archae - 104; Bacteria - 5138; Metazoa - 133; Fungi - 118; Plants - 143; Viruses - 0; Other Eukaryotes - 2271 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0576eggNOG:KOG3003EMBL:AC021199EMBL:AY065397EMBL:AY117176EMBL:CP002684EnsemblPlants:AT1G36390
EnsemblPlants:AT1G36390.1EnsemblPlants:AT1G36390.2entrez:840545Gene3D:2.30.22.10Gene3D:3.90.20.20GeneID:840545GO:GO:0000774
GO:GO:0005507GO:GO:0005759GO:GO:0006457GO:GO:0009507GO:GO:0009570Gramene:AT1G36390.1Gramene:AT1G36390.2
HAMAP:MF_01151hmmpanther:PTHR21237hmmpanther:PTHR21237:SF4InterPro:IPR000740InterPro:IPR009012InterPro:IPR013805KEGG:ath:AT1G36390
OMA:QADFDNTPANTHER:PTHR21237Pfam:PF01025PhylomeDB:Q9C8X4PIR:H86484PRINTS:PR00773PROSITE:PS01071
Proteomes:UP000006548RefSeq:NP_564475.1RefSeq:NP_849751.1scanprosite:PS01071SMR:Q9C8X4STRING:3702.AT1G36390.1SUPFAM:0036470
SUPFAM:0053405SUPFAM:SSF51064TAIR:AT1G36390UniGene:At.28501UniGene:At.48270UniProt:Q9C8X4
Coordinates (TAIR10) chr1:-:13701811..13703524
Molecular Weight (calculated) 31224.60 Da
IEP (calculated) 10.09
GRAVY (calculated) -0.45
Length 279 amino acids
Sequence (TAIR10)
(BLAST)
001: MAISFAIDPS ISPCFSFSSP SSSSKTLPLR NNLHFHGRPS PISPLISKPS RKFPIFSAHQ TNNSEEANSK QQADVKTLIR SYKQALLNGD ETSVTEIETM
101: FCKIEKEKNK MDQKVLSLSM KIASEKEMKI RLQADFDNTR KKLDKDRLST ESNAKVQILK SLLPIIDSFE KAKLQVRVDT DKEKKIDTSY QGIYRQFVEV
201: LRYLRVSVIA TVGKPFDPLL HEAISREESE AVKAGIITEE LNKGFVLGDR VLRPAKVKVS LGPVNKKTPS AAEEITPSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)