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AT1G36370.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : serine hydroxymethyltransferase 7
Curator
Summary (TAIR10)
Encodes a putative serine hydroxymethyltransferase.
Computational
Description (TAIR10)
serine hydroxymethyltransferase 7 (SHM7); FUNCTIONS IN: pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity; INVOLVED IN: response to cadmium ion, glycine metabolic process, L-serine metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Serine hydroxymethyltransferase, pyridoxal phosphate binding site (InterPro:IPR019798), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Serine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: serine hydroxymethyltransferase 6 (TAIR:AT1G22020.1); Has 11689 Blast hits to 11664 proteins in 2845 species: Archae - 258; Bacteria - 6485; Metazoa - 362; Fungi - 287; Plants - 350; Viruses - 6; Other Eukaryotes - 3941 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G36370-MONOMEREC:2.1.2.1eggNOG:COG0112eggNOG:KOG2467EMBL:AC021199EMBL:AY084945EMBL:BT002738
EMBL:CP002684EnsemblPlants:AT1G36370EnsemblPlants:AT1G36370.1entrez:840543Gene3D:3.40.640.10Gene3D:3.90.1150.10GeneID:840543
Genevisible:Q84WV0GO:GO:0004372GO:GO:0005737GO:GO:0006544GO:GO:0006563GO:GO:0030170GO:GO:0035999
GO:GO:0046686Gramene:AT1G36370.1gramene_pathway:2.1.2.1gramene_pathway:GLYSYN2-PWYgramene_pathway:PWY-181gramene_pathway:PWY-2161gramene_pathway:PWY-2201
gramene_pathway:PWY-3841HAMAP:MF_00051hmmpanther:PTHR11680hmmpanther:PTHR11680:SF7HOGENOM:HOG000239405InParanoid:Q84WV0InterPro:IPR001085
InterPro:IPR015421InterPro:IPR015422InterPro:IPR015424InterPro:IPR019798iPTMnet:Q84WV0KEGG:00260+2.1.2.1KEGG:00460+2.1.2.1
KEGG:00630+2.1.2.1KEGG:00670+2.1.2.1KEGG:00680+2.1.2.1KEGG:ath:AT1G36370KO:K00600OMA:WDIMEREPANTHER:PTHR11680
PaxDb:Q84WV0Pfam:PF00464Pfam:Q84WV0Pfscan:PS51257PhylomeDB:Q84WV0PIR:F86484PRIDE:Q84WV0
PRO:PR:Q84WV0PROSITE:PS00096ProteinModelPortal:Q84WV0Proteomes:UP000006548RefSeq:NP_564473.1scanprosite:PS00096SMR:Q84WV0
STRING:3702.AT1G36370.1SUPFAM:SSF53383TAIR:AT1G36370tair10-symbols:SHM7UniGene:At.23145UniPathway:UPA00193unipathway:UPA00288
UniProt:Q84WV0
Coordinates (TAIR10) chr1:-:13696240..13698576
Molecular Weight (calculated) 66297.30 Da
IEP (calculated) 7.89
GRAVY (calculated) -0.41
Length 598 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLSRSQTNF QLGFGCSHAS MTPTPTPRAP IADDSINLQV DQSFRSLPTT FSPIPLQLLE QKAEKTTTVD EPKKDGGGGG DQKEDEHFRI LGHHMCLKRQ
101: RDCPLLLTQS KHPKRSSIGD SDLESRRAAV RAWGDQPIHL ADPDIHELME KEKQRQVRGI ELIASENFVC RAVMEALGSH LTNKYSEGMP GARYYTGNQY
201: IDQIENLCIE RALTAFGLES DKWGVNVQPY SCTSANFAVY TGLLLPGERI MGLDSPSGGH MSHGYCTPGG KKISAASIFF ESFPYKVNPQ TGYIDYDKLE
301: DKALDYRPKI LICGGSSYPR DWDFARVRQI ADKCGAVLMC DMAHISGLVA TKECSNPFDH CDIVTSTTHK GLRGPRGGII FYRRGPKIRK QGHHSSHCDT
401: STHYDLEEKI NFAVFPSLQG GPHNNHIAAL AIALKQVATP EYKAYIQQMK KNAQALAAAL LRRKCRLVTG GTDNHLLLWD LTPMGLTGKV YEKVCEMCHI
501: TLNKTAIFGD NGTISPGGVR IGTPAMTTRG CIESDFETMA DFLIKAAQIT SALQREHGKS HKEFVKSLCT NKDIAELRNR VEAFALQYEM PASLIRIE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)