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AT1G36070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.956
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT1G78070.1); Has 24565 Blast hits to 12343 proteins in 577 species: Archae - 60; Bacteria - 7188; Metazoa - 6888; Fungi - 5026; Plants - 2359; Viruses - 0; Other Eukaryotes - 3044 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IF2HeggNOG:ENOG410Y2CGEMBL:BT026475EMBL:CP002684EnsemblPlants:AT1G36070EnsemblPlants:AT1G36070.1entrez:840511
ExpressionAtlas:Q0V7U5Gene3D:2.130.10.10GeneID:840511GO:GO:0080008Gramene:AT1G36070.1hmmpanther:PTHR22847hmmpanther:PTHR22847:SF453
HOGENOM:HOG000239432InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775OMA:RHGYLDCPfam:PF00400
Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q0V7U5PROSITE:PS00678PROSITE:PS50082PROSITE:PS50294Proteomes:UP000006548
RefSeq:NP_564469.1scanprosite:PS00678SMART:SM00320SMR:Q0V7U5STRING:3702.AT1G36070.1SUPFAM:SSF50978TAIR:AT1G36070
UniGene:At.16973UniProt:Q0V7U5
Coordinates (TAIR10) chr1:-:13467164..13470386
Molecular Weight (calculated) 47248.50 Da
IEP (calculated) 5.49
GRAVY (calculated) -0.44
Length 418 amino acids
Sequence (TAIR10)
(BLAST)
001: MEQTKDDSDF EDDCETKKME TDTSAQEARN GKDIQGIQWE GFKYNRDEFR ETRLKQYDNF VNILRPSSRE KLDKEHGQVV EKGKNFYDFQ FNTRLVTSTI
101: VHFQLRNLVW ATSKHDVYLM QNYSLMHWSS LLQRGKEVLN VARSVTPTQK LPGLFSEPLS RVQVSSMAVK ENLILLGGFD GELLCKCVNQ PGVAFCTRLS
201: TEDNAITNTV DIYRDPSGSL RLITANNDCK IRVFDAQSFT RVSEFALDWS VNNTSVSPDG KLLAVVGDST ECLISDSHSG KVISSLRGHK DYSFASAWHP
301: NGLILATGNQ DTACRLWDIR NPSESFAVLK GNMGAIRGLK FTPEGRFLAM AEPADFVHIF DTQSGFLQSQ EIDLFGEIAG ISFSPDTEAL YVGVADRTYG
401: SLLEYKRRKD NHYMDSFY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)