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AT1G35680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19676087 (2009): plastid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14617066 (2003): nucleus
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L21
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L21; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: response to cold, translation; LOCATED IN: ribosome, chloroplast stroma, nucleus, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L21, conserved site (InterPro:IPR018258), Ribosomal protein L21 (InterPro:IPR001787); BEST Arabidopsis thaliana protein match is: Ribosomal protein L21 (TAIR:AT4G30930.1); Has 7103 Blast hits to 7101 proteins in 2544 species: Archae - 0; Bacteria - 5138; Metazoa - 96; Fungi - 4; Plants - 134; Viruses - 0; Other Eukaryotes - 1731 (source: NCBI BLink).
Protein Annotations
BioGrid:25704eggNOG:ENOG4111TX4eggNOG:KOG1686EMBL:AC007887EMBL:AF428363EMBL:AY058118EMBL:AY116944
EMBL:CP002684EMBL:Y15964EMBL:Z49787EnsemblPlants:AT1G35680EnsemblPlants:AT1G35680.1entrez:840472GeneID:840472
Genevisible:P51412GO:GO:0003735GO:GO:0005634GO:GO:0005840GO:GO:0006412GO:GO:0009409GO:GO:0009507
GO:GO:0009570GO:GO:0009658GO:GO:0009793GO:GO:0009941GO:GO:0010027GO:GO:0019843Gramene:AT1G35680.1
HAMAP:MF_01363hmmpanther:PTHR21349hmmpanther:PTHR21349:SF2HOGENOM:HOG000238965InParanoid:P51412InterPro:IPR001787InterPro:IPR018258
InterPro:IPR028909KEGG:ath:AT1G35680KO:K02888OMA:TRIRIMGPaxDb:P51412Pfam:P51412Pfam:PF00829
PhylomeDB:P51412PIR:S71282PRIDE:P51412PRO:PR:P51412PROSITE:PS01169ProteinModelPortal:P51412Proteomes:UP000006548
RefSeq:NP_174808.1scanprosite:PS01169SMR:P51412STRING:3702.AT1G35680.1SUPFAM:SSF141091TAIR:AT1G35680TIGRfam:TIGR00061
TIGRFAMs:TIGR00061UniGene:At.23722UniProt:P51412
Coordinates (TAIR10) chr1:+:13208777..13210246
Molecular Weight (calculated) 24039.80 Da
IEP (calculated) 9.68
GRAVY (calculated) -0.15
Length 220 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSATLSL CSTFSAHCNV NSRRSSTILC SLSKPSLNLA KPLTGFLSPS TASTSRTAFT VAPKFAESVV EAEPETTDIE AVVVSDVSEV TEEKAKREEI
101: FAVIMVGGRQ YIVFPGRYLY TQRLKDANVD DQIVLNKVLL VGTKTHTYIG KPVVTNATVH AVVESQGLND KVVVFKYKPK KKYRRNIGHR QPNTRIRITG
201: ITGYEEYPAS PNVAVGEVNL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)