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AT1G35620.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Predictors External Curations
AmiGO : endoplasmic reticulum 16618929
TAIR : plasma membrane 17151019
TAIR : endoplasmic reticulum 16618929
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:25641898 (2015): plasma membrane
  • PMID:24030099 (2013): plasma membrane
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:16287169 (2006): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PDI-like 5-2
Curator
Summary (TAIR10)
Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Unlike several other PDI family members, transcript levels for this gene are not up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). However, the level of transcripts for this gene is slightly elevated in atbzip60 mutants.
Computational
Description (TAIR10)
PDI-like 5-2 (PDIL5-2); FUNCTIONS IN: protein disulfide isomerase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endoplasmic reticulum, plasma membrane, plant-type cell wall; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: PDI-like 1-1 (TAIR:AT1G21750.2); Has 16921 Blast hits to 14897 proteins in 2775 species: Archae - 169; Bacteria - 7975; Metazoa - 3273; Fungi - 1120; Plants - 1363; Viruses - 4; Other Eukaryotes - 3017 (source: NCBI BLink).
Protein Annotations
BioGrid:25693eggNOG:COG0526eggNOG:KOG0190EMBL:AC007887
EMBL:AF386986EMBL:BT008751EMBL:CP002684EnsemblPlants:AT1G35620
EnsemblPlants:AT1G35620.1entrez:840461Gene3D:3.40.30.10GeneID:840461
Genevisible:Q94F09GO:GO:0003756GO:GO:0005774GO:GO:0005783
GO:GO:0006457GO:GO:0009505GO:GO:0009506GO:GO:0016021
GO:GO:0034976GO:GO:0045454Gramene:AT1G35620.1hmmpanther:PTHR18929
hmmpanther:PTHR18929:SF98HOGENOM:HOG000239154InParanoid:Q94F09InterPro:IPR012336
InterPro:IPR013766InterPro:IPR017937iPTMnet:Q94F09KEGG:ath:AT1G35620
KO:K09580OMA:INSMIGIPaxDb:Q94F09Pfam:PF00085
Pfam:PF13848Pfam:Q94F09Pfscan:PS51352PhylomeDB:Q94F09
PRIDE:Q94F09PRO:PR:Q94F09PROSITE:PS00194PROSITE:PS51352
ProteinModelPortal:Q94F09Proteomes:UP000006548RefSeq:NP_564462.1scanprosite:PS00194
SMR:Q94F09STRING:3702.AT1G35620.1SUPFAM:SSF52833TAIR:AT1G35620
tair10-symbols:ATPDI8tair10-symbols:ATPDIL5-2tair10-symbols:PDI8tair10-symbols:PDIL5-2
TMHMM:TMhelixUniGene:At.15140UniGene:At.39523UniProt:Q94F09
Coordinates (TAIR10) chr1:+:13156504..13158280
Molecular Weight (calculated) 49853.60 Da
IEP (calculated) 4.88
GRAVY (calculated) -0.15
Length 440 amino acids
Sequence (TAIR10)
(BLAST)
001: MRSLKLLLCW ISFLTLSISI SASSDDQFTL DGTVLELTDS NFDSAISTFD CIFVDFYAPW CGHCKRLNPE LDAAAPILAK LKQPIVIAKL NADKYSRLAR
101: KIEIDAFPTL MLYNHGVPME YYGPRKADLL VRYLKKFVAP DVAVLESDST VKEFVEDAGT FFPVFIGFGL NESIISGLGR KYKKKAWFAV SKEVSEDTMV
201: SYDFDKAPAL VANHPTYNEH SVFYGPFEDG FLEEFVKQSF LPLILPINHD TLKLLKDDER KIVLTIVEDE THESLEKLYK ALRAAAHANR DLVFGYVGVK
301: QFEEFVDSFH VDKKTNLPKI VVWDGDEEYD QVTGIETITQ EEDHLTQVSR FLEGYREGRT EKKKINGPSF MGFINSMIGI RSVYILVFLV AVIMMLRSLG
401: QVEEPTGVRT ATAVRERVDQ ATTVPEDESS EHKPSDKKED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)