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AT1G35540.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : auxin response factor 14
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
auxin response factor 14 (ARF14); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 21 (TAIR:AT1G34410.1); Has 2212 Blast hits to 1870 proteins in 70 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2210; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:25682EMBL:AC007887EMBL:CP002684EnsemblPlants:AT1G35540EnsemblPlants:AT1G35540.1entrez:840450Gene3D:2.40.330.10
GeneID:840450GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009734
Gramene:AT1G35540.1hmmpanther:PTHR31384hmmpanther:PTHR31384:SF1HOGENOM:HOG000241141IntAct:Q9LQE8InterPro:IPR000270InterPro:IPR003340
InterPro:IPR010525InterPro:IPR015300InterPro:IPR033389KEGG:ath:AT1G35540OMA:DITEDAMPaxDb:Q9LQE8Pfam:PF02309
Pfam:PF02362Pfam:PF06507Pfam:Q9LQE8Pfscan:PS50863Pfscan:PS51745PhylomeDB:Q9LQE8PIR:G86476
PRIDE:Q9LQE8PRO:PR:Q9LQE8PROSITE:PS50863PROSITE:PS51745ProteinModelPortal:Q9LQE8Proteomes:UP000006548RefSeq:NP_174786.1
SMART:SM01019SMR:Q9LQE8STRING:3702.AT1G35540.1SUPFAM:SSF101936SUPFAM:SSF54277TAIR:AT1G35540tair10-symbols:ARF14
UniGene:At.39556UniProt:Q9LQE8
Coordinates (TAIR10) chr1:+:13108634..13111700
Molecular Weight (calculated) 68622.00 Da
IEP (calculated) 6.94
GRAVY (calculated) -0.36
Length 605 amino acids
Sequence (TAIR10)
(BLAST)
001: MESGNVVNTQ PELSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGEKVYYFP QGHIELVEAS TREELNELQP ICDFPSKLQC RVIAIQLKVE NNSDETYAEI
101: TLMPDTTQVV IPTQNQNQFR PLVNSFTKVL TASDTSVHGG FSVPKKHAIE CLPPLDMSQP LPTQEILAID LHGNQWRFRH IYRGTAQRHL LTIGWNAFTT
201: SKKLVEGDVI VFVRGETGEL RVGIRRAGHQ QGNIPSSIVS IESMRHGIIA SAKHAFDNQC MFIVVYKPRS SQFIVSYDKF LDVVNNKFNV GSRFTMRFEG
301: DDFSERRSFG TIIGVSDFSP HWKCSEWRSL EVQWDEFASF PRPNQVSPWD IEHLTPWSNV SRSSFLKNKR SREVNEIGSS SSHLLPPTLT QGQEIGQQSM
401: ATPMNISLRY RDITEDAMTP SRLLMSYPVQ PMAKLNYNNV VTPIEENITT NAVASFRLFG VSLATPSVIK DPVEQIGLEI SRLTQEKKFG QSQILRSPTE
501: IQSKQFSSTR TCTKVQMQGV TIGRAVDLSV LNGYDQLILE LEKLFDLKGQ LQARNQWEIA FTNNEEDKML VGEDPWPEFC NMVKKIFIYS KEEVKNLKSR
601: KSLSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)