AT1G35530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DEAD/DEAH box RNA helicase family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DEAD/DEAH box RNA helicase family protein ; FUNCTIONS IN: in 6 functions; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36020.1); Has 20447 Blast hits to 20241 proteins in 2853 species: Archae - 674; Bacteria - 11662; Metazoa - 2557; Fungi - 1790; Plants - 1282; Viruses - 18; Other Eukaryotes - 2464 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:13089994..13097078 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 148363.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.31 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.49 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1324 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGSRVPIETI EEDGEFDWEA AVKEIDLACL KTTNASSSSS SHFTPLANPP ITANLTKPPA KRQSTLDKFI GRTEHKPENH QVVSECGVND NDNSPLVGID 0101: PEAAKTWIYP GFVPLRDYQF AITKTALFSN TLVALPTGLG KTLIAAVVMY NYFRWFPQGK IVFAAPSRPL VMQQIEACHN IVGIPQEWTI DLTGQTCPSK 0201: RAFLWKSKRV FFVTPQVLEK DIQSGTCLTN YLVCLVIDEA HRALGNYSYC VVVRELMAVP IQLRILALTA TPGSKTQAIQ GIIDNLQIST LEYRNESDHD 0301: VCPYVHDRKL EVIEVPLGQD ADDVSKRLFH VIRPYAVRLK NFGVNLNRDI QTLSPHEVLM ARDKFRQAPL PGLPHVNHGD VESCFAALIT LYHIRKLLSS 0401: HGIRPAYEML EEKLKEGPFA RLMSKNEDIR MTKLLMQQRL SHGAPSPKLS KMLEILVDHF KVKDPKTSRV IIFSNFRGSV RDIMNALSNI GDMVKATEFI 0501: GQSSGKTLKG QSQKIQQAVL EKFRAGGFNV IVATSIGEEG LDIMEVDLVI CFDANVSPLR MIQRMGRTGR KNNGRIPHVY KPEVQHVEFS IKQFVPRGKK 0601: LQEEYATETP AFQKKLTPAE THMLAKYYNN PDEEKLRVSL IAFPHFQTLP SKVHKVMHSR QTGMLIDAMQ HLQEPTFSEQ SKSFFTEFRA PLGEREELDT 0701: GLRVTNDPKD LHSVRDLEVN TSQRKAKQVE SPTSTLETTE KDYEESSPTH RYLFSSECAS VDTLGNVFVM PVPLLFFPNV LESDNTPLPK TEKQHSCRNT 0801: SHIDLVPVDT SEKHRQDNIS CKLKERFSPD GASETLETHS LVKRNSTRVG EDDVANSVGE IVLSSDEDDC EGLELSPRLT NFIKSGIVPE SPVYDQGEAN 0901: REEDLEFPQL SSPMRFSNEL AGESSFPERK VQHKCNDYNI VSTTTELRTP QKEVGLANGT ECLAVSPIPE DWRTPLANLT NTNSSARKDW RVSSGEKLET 1001: LRQPRKLKRL RRLGDCSSAV KENYPGITEA DHIRSRSRGK KHIRGKKKMI MDDDVQVFID EEAEVSSGAE MSADENEDVT GDSFEDSFID DGTMPTANTQ 1101: AESGKVDMMA VYRYIQPKIS FFYCEVNELI KNHKVSFHRR SLLSQSPLPA RFRDLAASSL SPYSAGPLTR INESRSDSDK SLSSLRTPKT TNSESNQDAM 1201: MIGNLSVVQI SSDSRKRKFS LCNSANAPVI NLESKFAAHA QATEKESHEG VRSNAGALEY NDDDDDAFFA TLDFDAMEAQ ATLLLSKQRS EAKEKEDATV 1301: IPNPGMQRSD GMEKDAPSFD LGLW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)