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AT1G35520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : auxin response factor 15
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
auxin response factor 15 (ARF15); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 21 (TAIR:AT1G34410.1); Has 2399 Blast hits to 2050 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2398; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioGrid:25679EMBL:AC007887EMBL:CP002684EnsemblPlants:AT1G35520EnsemblPlants:AT1G35520.1entrez:840447Gene3D:2.40.330.10
GeneID:840447GO:GO:0003677GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009734Gramene:AT1G35520.1
hmmpanther:PTHR31384hmmpanther:PTHR31384:SF1HOGENOM:HOG000241141InterPro:IPR000270InterPro:IPR003340InterPro:IPR010525InterPro:IPR015300
InterPro:IPR033389iPTMnet:Q9LQE3KEGG:ath:AT1G35520MINT:MINT-8067881PaxDb:Q9LQE3Pfam:PF02309Pfam:PF02362
Pfam:PF06507Pfam:Q9LQE3Pfscan:PS50863Pfscan:PS51745PhylomeDB:Q9LQE3PRO:PR:Q9LQE3PROSITE:PS50863
PROSITE:PS51745ProteinModelPortal:Q9LQE3Proteomes:UP000006548RefSeq:NP_174784.1SMART:SM01019SMR:Q9LQE3STRING:3702.AT1G35520.1
SUPFAM:SSF101936SUPFAM:SSF54277TAIR:AT1G35520tair10-symbols:ARF15UniGene:At.51956UniProt:Q9LQE3
Coordinates (TAIR10) chr1:-:13082819..13085830
Molecular Weight (calculated) 67967.60 Da
IEP (calculated) 8.25
GRAVY (calculated) -0.38
Length 598 amino acids
Sequence (TAIR10)
(BLAST)
001: METGNVVNAQ PELSGIIDRS KSYMYEQLWK LCAGPLCDIP KLGEKVYYFP QGNIELVEAS TREELNELQP ICDLPSKLQC RVIAIHLKVE NNSDETYAKI
101: TLMPDTTVSE NLQVVIPTQN ENQFRPLVNS FTKVLTASDI SANGVFSVPK KHAIECLPPL DMSQPLPAQE LLAIDLHGNQ WSFRHSYRGT PQRHLLTTGW
201: NEFTTSKKLV KGDVIVFVRG ETGELRVGIR RARHQQGNIP SSIVSIDCMR HGVIASAKHA FDNQCMFIVV YKPRSSQFIV SYDKFLDAVN NKFNVGSRFT
301: MRFEGDDLSE RRYFGTIIGV SNFSPHWKCS DWRSLEVQWD EFASFLRPNK VSPWEIEHLM PALNVPRSSF LKNKRLREVN EFGSSSSHLL PPILTQGQEI
401: GQLSVASPMN ISLLYRETTE DAMNPSRLLM SYPVQPMPKR NYNNQMVTQI EENITTKAGT NFRLFGVSLA TPPVIKDPIE QIGSDISKLT EGKKFGQSQT
501: LRSPTKIQSK QFSSTRTCTK VQMQGVTIGR AVDLSVLNGY DQLILELEKL FDLKGQLQTR NQWKIIFTGS DEDEMLVGDD PWPEFCNMVK RIYIQKRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)