AT1G35470.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.576 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SPla/RYanodine receptor (SPRY) domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SPla/RYanodine receptor (SPRY) domain-containing protein; CONTAINS InterPro DOMAIN/s: Ran binding protein, CRA domain (InterPro:IPR019589), B302 (SPRY)-like (InterPro:IPR001870), CTLH, C-terminal LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594), Ran binding protein-like, CRA domain (InterPro:IPR013144), SPla/RYanodine receptor SPRY (InterPro:IPR003877); BEST Arabidopsis thaliana protein match is: SPla/RYanodine receptor (SPRY) domain-containing protein (TAIR:AT4G09340.1); Has 1199 Blast hits to 1140 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 508; Fungi - 329; Plants - 180; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:13051636..13054922 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52096.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.15 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 465 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNSSPPPANS ANGDTTNNGE NGQDLNLNFL DKIRLSAKRD AKEDEGEELP TELNTINSAG GFLVVSPDKL SVKYTNTNLH GHDVGVVQAN KPAPIKCLTY 101: YFEIFVKDSG IKGQIAIGFT KESFKMRRQP GWEVNSCGYH GDDGYLYRGQ GKGEPFGPKF TKDDAVGGGI NYASQEFFFT KNGTIVGKIP KDIRGHLFPT 201: VAVHSQNEEV LVNFGKKKFA FDIKGYEASE RNKQQLAIEK ISIPPNIGYG LVKTYLLHYG YEETLDAFNL ATKNTVPPIH IDQENAIDED DSSYALKQRK 301: NLRQLVRNGE IDTALAELQK LYPQIVQDDK SVVCFLLHCQ KFIELVGKLE EGVNYGRLEL AKFVGLTGFQ DIVEDCFALL AYEKPEESSV WYFLEDSQRE 401: LVADAVNAAI LSTNPNKKDV QRSCHLQSHL EKLLRQLTVC CLERRSLNGD QGETFRLRHV LNNNR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)