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AT1G35350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.773
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : EXS (ERD1/XPR1/SYG1) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EXS (ERD1/XPR1/SYG1) family protein; LOCATED IN: integral to membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EXS, C-terminal (InterPro:IPR004342), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: EXS (ERD1/XPR1/SYG1) family protein (TAIR:AT1G26730.1); Has 1149 Blast hits to 1073 proteins in 218 species: Archae - 1; Bacteria - 33; Metazoa - 257; Fungi - 379; Plants - 329; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).
Protein Annotations
BioGrid:25656eggNOG:COG5409eggNOG:KOG1162EMBL:AC069160EMBL:AY507960EMBL:CP002684EnsemblPlants:AT1G35350
EnsemblPlants:AT1G35350.1entrez:840424GeneID:840424Genevisible:Q6R8G2GO:GO:0005886GO:GO:0006817GO:GO:0016021
Gramene:AT1G35350.1hmmpanther:PTHR10783hmmpanther:PTHR10783:SF43HOGENOM:HOG000241861InParanoid:Q6R8G2InterPro:IPR004331InterPro:IPR004342
KEGG:ath:AT1G35350ncoils:CoilOMA:KLMTQRQPaxDb:Q6R8G2Pfam:PF03105Pfam:PF03124Pfam:Q6R8G2
Pfscan:PS51380Pfscan:PS51382PhylomeDB:Q6R8G2PIR:F86474PRIDE:Q6R8G2PRO:PR:Q6R8G2PROSITE:PS51380
PROSITE:PS51382ProteinModelPortal:Q6R8G2Proteomes:UP000006548RefSeq:NP_174768.2STRING:3702.AT1G35350.1TAIR:AT1G35350TMHMM:TMhelix
UniGene:At.49310UniProt:Q6R8G2
Coordinates (TAIR10) chr1:-:12981251..12984583
Molecular Weight (calculated) 87400.40 Da
IEP (calculated) 9.52
GRAVY (calculated) -0.08
Length 751 amino acids
Sequence (TAIR10)
(BLAST)
001: MKFGKEYVAQ MIPEWQQAYM DYTCLKTILR EIKTSQKRSE SQGVLKRKLS GRRNFSGLTK RYSRTFSSRD LENHDIMVHA TTGDDGFEKY ETTILKVSEV
101: GRESELVFFK TLDLEFDKVN RFYRSNVEEL VKEAVVLNRQ MDALIAYRIK LDQPSTSWSC SETVSVDINA LDSKEQKGKT LAEEMGIKVE ENVSNGGDST
201: KETAPEALSV LDRIRLNKNQ ENPLSTIRNV LKLSNKEDIK FTKENLKKIE ERLKNVFIEF YRKLRHLKNY SFLNTLAISK IMKKYDKIAL RNAAKLYMEM
301: VDKSYLTSSD EINKLMLRVE SIFVEHFAGS NRSKGMNLLR PKVTKEKHRI TFSTGFFVGC TVSLVIALGL FIHARNIMGA VGHKLYMETM FPLYSLFAFV
401: VLHMIMYASN IYFWKRYRVN YPFIFGFKEG TELGYGHVLL LSFGLGTLAL CAVLVNMDME MDPNTNDYKT ITELVPLFVV ALVIAISVCP FNIFYRSSRF
501: FFLMVLFRCI AAPLYKVNLP DFFLADQLTS QVQALRSLEF YICYYGWGDF KQRQSTCKSS DVYSTFYFIV AVIPYWSRFL QCVRRLIEEK DVSQGFNALK
601: YLLTIVAVCL RTAFSINRGN DWKIAAWVFS GLATFYGTYW DIVYDWGLLH RPSKSWLREK LLVPHKSVYY VAMVVNVVLR LAWLQTVLDF NISFLHRETM
701: VALIAILEII RRGIWNFFRL ENEHLNNVGK FRAFKSVPLP FNYDEEEDRD S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)