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AT1G35240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : auxin response factor 20
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
auxin response factor 20 (ARF20); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 21 (TAIR:AT1G34410.1); Has 2463 Blast hits to 2070 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2460; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
BioGrid:25645EMBL:AC069160EMBL:AY669795EMBL:CP002684EnsemblPlants:AT1G35240EnsemblPlants:AT1G35240.1entrez:840413
Gene3D:2.40.330.10GeneID:840413GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0009734Gramene:AT1G35240.1hmmpanther:PTHR31384hmmpanther:PTHR31384:SF1HOGENOM:HOG000241141IntAct:Q9C7I9InterPro:IPR000270
InterPro:IPR003340InterPro:IPR010525InterPro:IPR015300InterPro:IPR033389KEGG:ath:AT1G35240PaxDb:Q9C7I9Pfam:PF02309
Pfam:PF02362Pfam:PF06507Pfam:Q9C7I9Pfscan:PS50863Pfscan:PS51745PhylomeDB:Q9C7I9PIR:D86473
PRIDE:Q9C7I9PRO:PR:Q9C7I9PROSITE:PS50863PROSITE:PS51745ProteinModelPortal:Q9C7I9Proteomes:UP000006548RefSeq:NP_174758.2
SMART:SM01019SMR:Q9C7I9STRING:3702.AT1G35240.1SUPFAM:SSF101936SUPFAM:SSF54277TAIR:AT1G35240tair10-symbols:ARF20
UniGene:At.51187UniProt:Q9C7I9
Coordinates (TAIR10) chr1:-:12927457..12930523
Molecular Weight (calculated) 66973.30 Da
IEP (calculated) 7.71
GRAVY (calculated) -0.36
Length 590 amino acids
Sequence (TAIR10)
(BLAST)
001: METGNVVNAQ PELSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGENVYYFP QGNIELVDAS TREELNELQP ICDLPSKLQC RVIAIHLKVE NNSDETYAEI
101: TLMPDTTQVV IPTQSENQFR PLVNSFTKVL TASDTSAYGG FFVPKKHAIE CLPPLPLPAQ ELLAKDLHGN QWRFRHSYRG TPQRHSLTTG WNEFTTSKKL
201: VKGDVIVFVR GETGELRVGI RRARHQQGNI PSSIVSIDCM RHGVIASAKH ALDNQCIFIV VYKPSIRSSQ FIVSYDKFLD AMNNKFIVGS RFTMRFEGDD
301: FSERRYFGTI IGVNDFSPHW KCSEWRSLEV QWDEFASFSR PNKVSPWEIE HLMSALNVPR SSLLKNKRLR EVNEFGQEIG QLSVASPMNT SLRYRDTTED
401: AMNPSRLLMS YPVQPMPKLN YNNQMVTQIE ENITTKAVTN FRLFGVSLAI PLVIKDPIEE IGSDISKLTE GKKFGQSQTL RSPIEIQSKQ FGSTRTCTKV
501: QMQGVTIGRA VDLSVLNGYD QLILELEKLF DLKGQLQTRN QWKIAFTDSD GYEMLVGDDP WPEFCKMVKK ILIYSKEEVK NLKSSKSLSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)