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AT1G35150.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.962
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : General transcription factor 2-related zinc finger protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
General transcription factor 2-related zinc finger protein; BEST Arabidopsis thaliana protein match is: hAT family dimerisation domain (TAIR:AT2G06500.1); Has 572 Blast hits to 482 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 312; Fungi - 0; Plants - 260; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IG9WeggNOG:ENOG410XQ1YEMBL:AC079605EMBL:CP002684
EnsemblPlants:AT1G35150EnsemblPlants:AT1G35150.1entrez:840402GeneID:840402
Gramene:AT1G35150.1hmmpanther:PTHR11697hmmpanther:PTHR11697:SF116HOGENOM:HOG000239492
InterPro:IPR025398KEGG:ath:AT1G35150OMA:NIMIHETPfam:PF14291
PhylomeDB:Q9C6E6PIR:B86472Proteomes:UP000006548RefSeq:NP_174748.1
STRING:3702.AT1G35150.1TAIR:AT1G35150UniGene:At.51946UniProt:Q9C6E6
Coordinates (TAIR10) chr1:-:12864158..12866238
Molecular Weight (calculated) 53070.70 Da
IEP (calculated) 5.92
GRAVY (calculated) -0.47
Length 459 amino acids
Sequence (TAIR10)
(BLAST)
001: MLDNKKREHM PTLAPPSRCL ITTIMWTVWM TNEVDENEFD NKDQDEVVHE EKKSGQKEEL PSNISDPVNW DDMNMRFRDL LVEKGLATRH DKKGGYLATS
101: GYNDWRNLSK RLKEHKGSHD HITCMTRRAE LESRLQKNKT IDKHAQEAIN KDNIHWREVL LRIIALVKTH AKNNLAFRGK NEKVGQDRNG NFLSFIEMIA
201: EFDVVMREHI RRIGAAEIYS HYLSHKIQNE LIGILTGEIR LMIMKTIHAS KYCSIILDCT PDISHKEQMT MIIRCVNISS TLTKVEEFYL TFLEVKDKSS
301: EGLFSKIKEA LVDMELEIDD VRGQESETHG IGVFEILFGM ILWYDLLAVV NRVSKTLQSA DIDIDVAIIE LKGLDMDIEA EFLVKKKRTI RRKKHFDEVS
401: EKGDENMDLS PEEDFRINYF FTLIDQALKL TSASDESLMA SCVHLESSLK HGEHSDIDG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)