AT1G34420.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.993 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : leucine-rich repeat transmembrane protein kinase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
leucine-rich repeat transmembrane protein kinase family protein; FUNCTIONS IN: protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT2G41820.1); Has 146592 Blast hits to 61165 proteins in 1949 species: Archae - 41; Bacteria - 12464; Metazoa - 44749; Fungi - 1974; Plants - 76166; Viruses - 76; Other Eukaryotes - 11122 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:12584587..12587570 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 106114.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.73 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.04 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 966 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFTGVKKMKK IHVPPETGKF MFCLFFSFLS CCHVCFSELS LNQTNTMIEL SSFLNISDWN LPGSERNPCS WNGVLCSLPD NSSVISLSLS NFDLSNSSFL 101: PLVCNLQTLE SLDVSNNRLS SIPEGFVTNC ERLIALKHLN FSTNKFSTSP GFRGFSKLAV LDFSHNVLSG NVGDYGFDGL VQLRSLNLSF NRLTGSVPVH 201: LTKSLEKLEV SDNSLSGTIP EGIKDYQELT LIDLSDNQLN GSIPSSLGNL SKLESLLLSN NYLSGLIPES LSSIQTLRRF AANRNRFTGE IPSGLTKHLE 301: NLDLSFNSLA GSIPGDLLSQ LKLVSVDLSS NQLVGWIPQS ISSSLVRLRL GSNKLTGSVP SVAFESLQLL TYLEMDNNSL TGFIPPSFGN LVSLNLLNLA 401: MNEFTGILPP AFGNLSRLQV IKLQQNKLTG EIPDTIAFLS NLLILNISCN SLSGSIPPSL SQLKRLSNMN LQGNNLNGTI PDNIQNLEDL IELQLGQNQL 501: RGRIPVMPRK LQISLNLSYN LFEGSIPTTL SELDRLEVLD LSNNNFSGEI PNFLSRLMSL TQLILSNNQL TGNIPRFTHN VSVDVRGNPG VKLKTENEVS 601: IQRNPSGKSK LVMIVIFVSL GVLALLTGII TVTVLKFSRR CKGINNMQVD PDEEGSTVLP EVIHGKLLTS NALHRSNINF AKAVEAVAHP EHGLHQTMFW 701: SYYRVVMPSG SSYFIKKLNT RDRVFQQASS EQLEVELEML GKLHHTNVMV PLAYVLYSEG CLLIYDFSHT CTLYEILHNH SSGVVDWTSR YSIAVGIAQG 801: ISYLHGSESS GRDPILLPDL SSKKILLKSL TEPLVGDIEL FKVIDPSKSN SSLSAVAGTI GYIPPEYAYT MRVTMAGNVY SFGVILLELL TGRPAVSEGR 901: DLAKWVQSHS SHQEQQNNIL DLRVSKTSTV ATKQMLRALG VALACINISP GARPKMKTVL RMLTRL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)