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AT1G34390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : auxin response factor 22
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
auxin response factor 22 (ARF22); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), Transcriptional factor B3 (InterPro:IPR003340), AUX/IAA protein (InterPro:IPR003311), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 12 (TAIR:AT1G34310.1); Has 2369 Blast hits to 2032 proteins in 80 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2368; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioGrid:25573EMBL:AC023913EMBL:AY669796EMBL:CP002684EnsemblPlants:AT1G34390EnsemblPlants:AT1G34390.1entrez:840341
Gene3D:2.40.330.10GeneID:840341GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0009734Gramene:AT1G34390.1hmmpanther:PTHR31384hmmpanther:PTHR31384:SF1HOGENOM:HOG000241141IntAct:Q9C8N7InterPro:IPR000270
InterPro:IPR003340InterPro:IPR010525InterPro:IPR015300InterPro:IPR033389KEGG:ath:AT1G34390OMA:NITTNANPaxDb:Q9C8N7
Pfam:PF02309Pfam:PF02362Pfam:PF06507Pfam:Q9C8N7Pfscan:PS50863Pfscan:PS51745PhylomeDB:Q9C8N7
PIR:C86468PRIDE:Q9C8N7PRO:PR:Q9C8N7PROSITE:PS50863PROSITE:PS51745ProteinModelPortal:Q9C8N7Proteomes:UP000006548
RefSeq:NP_174699.2SMART:SM01019SMR:Q9C8N7STRING:3702.AT1G34390.1SUPFAM:SSF101936SUPFAM:SSF54277TAIR:AT1G34390
tair10-symbols:ARF22UniGene:At.51186UniProt:Q9C8N7
Coordinates (TAIR10) chr1:+:12556005..12559082
Molecular Weight (calculated) 67737.00 Da
IEP (calculated) 6.05
GRAVY (calculated) -0.38
Length 598 amino acids
Sequence (TAIR10)
(BLAST)
001: MESGNIVNAQ PELSGIIDGS KSYMYEQLWK LCAGPLCDIP KLGEKIYYFP QGNIELVEAS TREELNELKP ICDLPSKLQC RVIAIQLKVE NNSDETYAEI
101: TLMPDTTQVV IPTQNENQFR PLVNSFTKVL TASDTSGGFF VPKKHAIECL PPLDMSQPLP TQELLATDLH GNQWRFNHNY RGTPQRHLLT TGWNAFTTSK
201: KLVAGDVIVF VRGETGELRV GIRRAGHQQG NIPSSIISIE SMRHGVIASA KHAFDNQCMF IVVYKPRSSQ FIVSYDKFLD AVNNKFNVGS RFTMRFEGDD
301: FSERRYFGTI IGVSDFSPHW KCSEWRNLEV QWDEFASFSR PNKVSPWEIE HLMPALNVPR PSLLKNKRLR EVNEIGSSSS HLLPPILTQG QEIGQLSVAS
401: PMNISLTYRD TTEDVMNPSR LLMSYPVQPM PKLNYNNQMV TQIEENITTK TGTNFRLFGV SLVTPSVIKD PIEEIGSEIS KLTEGKKFGQ SQTLRSPTEI
501: QSKQFSSTRT CTKVQMQGVT IERAVDLSVL NGYDQLILEL EELFDLKGQL QTRNQWEIAF TDSDDDKMLV GDDPWPEFCN MVKKILIFKR GGQKLEVQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)