AT1G34355.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : forkhead-associated (FHA) domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes PS1 (Parallel Spindle 1). Mutations in PS1 lead to diploid male spores, diploid pollen grains, and spontaneous triploid plants in the next generation. Female meiosis is not affected in the mutants. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
PARALLEL SPINDLE 1 (PS1); CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Nucleotide binding protein, PINc (InterPro:IPR006596), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G34110.1); Has 3416 Blast hits to 2816 proteins in 576 species: Archae - 6; Bacteria - 1040; Metazoa - 1174; Fungi - 342; Plants - 221; Viruses - 2; Other Eukaryotes - 631 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:12536497..12541730 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 163237.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.44 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1477 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEVKEEKLME EKQRLPEKTI PVFTVLKNGA ILKNIFVVNS RDFSSPERNG STVSDDDGEV EEILVVGRHP DCDILLTHPS ISRFHLEIRS ISSRQKLFVT 0101: DLSSVHGTWV RDLRIEPHGC VEVEEGDTIR IGGSTRIYRL HWIPLSRAYD LDNPFVSPLD ASTVLEQEEE NRMLEAENLE VAQHQSLENT TSGDEGVLHL 0201: DVTSEGTGSS VPSEDEDTYV TTREMSMPVA SPSVLTLVRD SVETQKLQFN EDLQTSPKWD LDVIESVAEK LSGSFVRSTQ QSGGDVEGLG CSELFDAAEA 0301: DECDVRGDGG LHLNVISEKM ESSVPNMIEA ENLEVAQHQS LANTALGDDE DLHLDVTSEG TGSSVPSEDE DTYITTMEIS VPLASPNVLT LARDSIKTQK 0401: LQSTQDFQTP TMWDLDVVEA AAEKPSSSCV LGKKLSGGYV EELGCFELFV AAEADKCDVR GDGSLHLNEI SERMESSMSN KEDDPFLAAK ETSSLPLSTD 0501: FINPETLWLV EDVQASPEFC TSSVKANAEN PSSGCSPSTE QIDGCFETSG CSAFDLAAEV ESLSLHQEVS EETEFVTKEV MGVSSEPLGK ADIRSHEENG 0601: ESEDSRQVIE VSAEPVAKAD IQSHEENGET EGSRQVIEVS PKSFSEAEPT IEILTGEAQG IIGSEFPSEL AVETESENLL HQKSIGETKN EIRSHEDYGE 0701: TEDYGETECS WPDIAVSPSS VSPPEPTLEI LTDEARGLLG SEFLSEVTVE TEIENLLHQK SNVETKADIL IHEDYGETEV SRQIITVSPN SFSKAEPTLE 0801: TEDSRQQARG LVGSDSEFQS EVAMKTECEN LLNQKRNGET KVSSRQASPV SDCLSTPKDR LSSINTDDIQ SLCSSSQPPS ESEVNPATDQ DQESGIISET 0901: EKPKTELLIG SGRSEKYYSL SEIEGEENTD IGRLSRCPIP SALAAKTSED TKLIEELSSS DSGSQENQTP ETHAVRDDVL CDMDSSSTCN IWSRRGKAAS 1001: VLKIRTNKSQ GKQKQTGRQP KDKLHRKQAL SDKSISLTIH HGAEILEPEI FTPDKENLTP SSHMLKRLQD IGDVKDSKSS LKLSGKSCSS LVHSSIAVLA 1101: SEAFTEPEIF TPDKENLTPS SHMLKRLREF GDIKDTKGSS SKATRKPFFD IRMEENVMVE QEPEDLHSLG SKSKLKHEPL APKKKAERAP FQPLLEKSSF 1201: QSQSYTEASS TASARNNISR GIRSSSNLSD AKSKMKWTIV LDTSSLLDKE SRKPLQLLQG LKGTHLVVPR TVLRELNEVK RSRSFLFRRR TEIASSALDW 1301: IEECKVNSKW WIQVQSPTEE TKAIAPTPPV TPQSNGSSAF PFSLHWNNYA PEIDSPTSED QVLECALLYR NRNRDEKLVL LSNDVTLKIK AMAEGVICET 1401: PHEFYESLVN PFSERFMWTE STARGRTWSH LDNDVLRERY NDRACRRKST YNRGESGAAA KGLKLILLHN SHYGHTH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)