AT1G34320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.798 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF668) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF668); INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF668 (InterPro:IPR007700), Protein of unknown function DUF3475 (InterPro:IPR021864); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF668) (TAIR:AT5G08660.1); Has 339 Blast hits to 273 proteins in 21 species: Archae - 0; Bacteria - 1; Metazoa - 3; Fungi - 0; Plants - 335; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:12520713..12524046 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72844.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.59 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||
| Length | 657 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGGLCSRSSS VNNAPGGTFA HVNGHHLNNN ASDLNSHSGE SGLKDDPSPV TENVDDNKHT SESFSFPIVS SGSHPQNIED GIPRLSRVLS QKSRSTKSRQ 101: AAVAKVSEVS SLLGRAGTMG LGKAVDVLDT LGSSMTNLNL SGGFSSATTV KGNKISILSF EVANTIVKGA NLMHSLSKDS ITHLKEVVLP SEGVQNLISK 201: DMDELLRIAA ADKREELRIF SGEVVRFGNR CKDPQYHNLD RFFDRLGSEF TPQKHLKQEA ETIMHQMMSF VHFTADLYHE LHALDRFEQD YQRKIQEEEN 301: PSTAQRGVGD TLAILRTELK SQKKHVRNLK KKSLWSRILE EVMEKLVDVV HFLHLEIHEA FGGADPDKPA NDPPINHKKL GSAGLALHYA NIITQIDTLV 401: SRSSTMPAST RDALYQGLPP SIKSALRSRI QSFQVKEELT VPQIKAEMEK TLQWLVPVAT NTTKAHHGFG WVGEWASSGS EANQRPAGQT ILRIDTLHHA 501: DKEKTEAYIL DLVVWLHHLV TQVRATTGYG LRSPVKSPIR SPNQKTIQLS SGSHNPSMGL PLLTTEDQEM LRDVSKRRKT PGISKSQEFE TVAKARLCKH 601: HRLSKSSSHS PMMGEMMKNK KDTFSTRRPS SVPIIDFDID RMKALDVIDR VDTIRSL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)