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AT1G34000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : one-helix protein 2
Curator
Summary (TAIR10)
Encodes a novel member of the Lhc family from Arabidopsis with one predicted transmembrane alpha-helix closely related to helix I of Lhc protein from PSI (Lhca4). Gene expression is triggered by light stress and both transcript and protein accumulate in a light intensity-dependent manner. Ohp2 is associated with PSI under low- or high-light conditions.
Computational
Description (TAIR10)
one-helix protein 2 (OHP2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to light intensity; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 171 Blast hits to 159 proteins in 56 species: Archae - 0; Bacteria - 5; Metazoa - 24; Fungi - 6; Plants - 64; Viruses - 16; Other Eukaryotes - 56 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYVKeggNOG:ENOG4112CEJEMBL:AC015446EMBL:AC079286EMBL:AF378874EMBL:AY045977EMBL:AY050472
EMBL:AY057393EMBL:AY091438EMBL:CP002684EnsemblPlants:AT1G34000EnsemblPlants:AT1G34000.1entrez:840297Gene3D:1.10.3460.10
GeneID:840297GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009642Gramene:AT1G34000.1hmmpanther:PTHR33401
HOGENOM:HOG000029686IntAct:Q9FEC1InterPro:IPR023329KEGG:ath:AT1G34000OMA:QDPEPKQPhylomeDB:Q9FEC1PIR:G86463
Proteomes:UP000006548RefSeq:NP_564432.3SMR:Q9FEC1STRING:3702.AT1G34000.1SUPFAM:0043399SUPFAM:SSF103511TAIR:AT1G34000
tair10-symbols:OHP2UniGene:At.48119UniGene:At.66856UniProt:Q9FEC1
Coordinates (TAIR10) chr1:-:12358151..12358902
Molecular Weight (calculated) 18666.30 Da
IEP (calculated) 9.93
GRAVY (calculated) -0.36
Length 172 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVASPIQCI RILNPSSSSS SSTASSSFRF STTTKPCVFI IRCSQTEGPL RRPSAPPTLR EPQKPVPPSQ PSSSPPPSPP PQKAVAVDGK SVTTVEFQRQ
101: KAKELQEYFK QKKLEAAGQG PFFGFQPKNE ISNGRWAMFG FAVGMLTEYA TGSDLVDQVK ILLSNFGILD LE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)