suba logo
AT1G33970.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.541
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G09950.1); Has 5286 Blast hits to 4352 proteins in 536 species: Archae - 103; Bacteria - 667; Metazoa - 2039; Fungi - 248; Plants - 262; Viruses - 31; Other Eukaryotes - 1936 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IM0GeggNOG:ENOG4111GYZEMBL:CP002684EnsemblPlants:AT1G33970EnsemblPlants:AT1G33970.1EnsemblPlants:AT1G33970.2EnsemblPlants:AT1G33970.4
EnsemblPlants:AT1G33970.5entrez:840294ExpressionAtlas:F4HT21Gene3D:3.40.50.300GeneID:840294GO:GO:0005525Gramene:AT1G33970.1
Gramene:AT1G33970.2Gramene:AT1G33970.4Gramene:AT1G33970.5hmmpanther:PTHR10903hmmpanther:PTHR10903:SF65InterPro:IPR006703InterPro:IPR027417
KEGG:ath:AT1G33970ncoils:CoilOMA:CENRCVLPfam:PF04548Pfscan:PS51720PROSITE:PS51720Proteomes:UP000006548
RefSeq:NP_001031136.1RefSeq:NP_001077647.1RefSeq:NP_001185134.1RefSeq:NP_564431.1SMR:F4HT21STRING:3702.AT1G33970.1SUPFAM:SSF52540
TAIR:AT1G33970UniGene:At.23512UniGene:At.46802UniGene:At.66870UniProt:F4HT21
Coordinates (TAIR10) chr1:-:12349614..12350960
Molecular Weight (calculated) 38817.20 Da
IEP (calculated) 4.68
GRAVY (calculated) -0.53
Length 342 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLLDMGGDM MEDDWEFASS SNPKRTLVLV GRTGNGKSAT GNSILGRKAF RSRARTVGVT STCESQRVVQ EDGDIINVVD TPGLFDLSTA ADFIGKEIVR
101: CISLAEDGIH AILLVFSVRR LAEEEQTVLS FLQALFGSKI ADYMIVVFTG GDELEENEET LEEYLADYCP EFLKEILGIC DNRLVLFNNK TTDKVKKAEQ
201: VQKLLSLVES VVKQNNGKPY SDELFHELQE EAIKLRDQKK EVELLQGYSN NEIDEFKKQI DMSYDRQLSR ITEMVETKLR DTAKRLEQQL GEEQAARLEA
301: EKRANEVQKR SSDEIKKLRE NLERAEKETK ELQKKLGKCI NL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)