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AT1G33900.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.953
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: response to bacterium; CONTAINS InterPro DOMAIN/s: AIG1 (InterPro:IPR006703); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G33930.1); Has 1258 Blast hits to 1107 proteins in 117 species: Archae - 0; Bacteria - 93; Metazoa - 786; Fungi - 6; Plants - 257; Viruses - 8; Other Eukaryotes - 108 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JA2XeggNOG:ENOG4111GYZEMBL:AC022288EMBL:CP002684
EnsemblPlants:AT1G33900EnsemblPlants:AT1G33900.1entrez:840287Gene3D:3.40.50.300
GeneID:840287GO:GO:0005525Gramene:AT1G33900.1hmmpanther:PTHR10903
hmmpanther:PTHR10903:SF65HOGENOM:HOG000115747InterPro:IPR006703InterPro:IPR027417
KEGG:ath:AT1G33900ncoils:CoilOMA:DEMHRKIPfam:PF04548
Pfscan:PS51720PhylomeDB:Q9C8U7PIR:G86462PROSITE:PS51720
Proteomes:UP000006548RefSeq:NP_174652.1SMR:Q9C8U7SUPFAM:SSF52540
TAIR:AT1G33900UniGene:At.51919UniProt:Q9C8U7
Coordinates (TAIR10) chr1:-:12311518..12313518
Molecular Weight (calculated) 36398.80 Da
IEP (calculated) 4.98
GRAVY (calculated) -0.33
Length 326 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGLEDTTDL RLPSASEPIK NIVLVGRTGN GKSATGNSLI GKQVFRSETR ATGVTMKCET CVAVTPCGTG INVIDTPGLF DLSVSAEYLS QEIINCLVLA
101: EDGLHAVVLV LSVRTRISQE EEATLNTLQV IFGSQIIDYL VVLFTGGDEL EANNMTLDDY LSKGCPEFLK TVLRLCGGRR ILFDNRTTDE GKKVKQVQEL
201: LAHVAAIEKS TSGIPFTDEM HRKIQKEAET LREQQKEVES KDLAAAEIEK WKKHYQTEHD KNMNMMAEML GNRLREDSER QEKMLLALRD NLEISQRQNK
301: LNELTDNEPD LIHCGVSLRR MPCNML
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)