AT1G33790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.847 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : jacalin lectin family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
jacalin lectin family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT2G25980.1); Has 1649 Blast hits to 676 proteins in 38 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1641; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:12256990..12260432 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48982.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.92 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 445 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAQKLEAKGG KGGNQWDDLL DHDNIAKIHV QGGHEGIQYV KFDYVKFDNL KIGQPKLGSI HGLSRKGFTQ TFEIDPTNEH LVSVEGYYDE SKGLVQGLKF 101: KTNKKTSDMI GYDENGLKFS LEVNGKKIIG FHGYAQTYLN SLGAYFVTAP PTKFDYQGGS GAQLWDDGTN YNGVRKISFA LDANEIRQIR IDYDKGGLIE 201: RREYGGNVGR QEEFVVDYPS EYIIYMEGTC DIVSDASKNR VRSLMFKTSK GRTSPIFGKV AARKFVFESN GSALIGFHGR AAAAVDAIGA YFSRFILPPS 301: AETLQAKGGE GGDPWSDGVF NGVRNIYVGQ GENGVSAVKF VYDKDSQVAE GNDHGKPTLL GYEEFKLEYP SEYITTVEGC FDKIFGSGGG VITMLKFKTN 401: KRTSPPFGLE TTSNFVLGKE GYKIVGFHGT SSHELHQLGV YVMPI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)