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AT1G33790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.803
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : jacalin lectin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
jacalin lectin family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT2G25980.1); Has 1649 Blast hits to 676 proteins in 38 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1641; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
BioGrid:25503eggNOG:ENOG410IJZZeggNOG:ENOG4111KSNEMBL:AC010164EMBL:AY054174EMBL:CP002684EnsemblPlants:AT1G33790
EnsemblPlants:AT1G33790.1EnsemblPlants:AT1G33790.2entrez:840271ExpressionAtlas:Q9LQ31Gene3D:2.100.10.30GeneID:840271Genevisible:Q9LQ31
GO:GO:0030246hmmpanther:PTHR23244hmmpanther:PTHR23244:SF208HOGENOM:HOG000015149InParanoid:Q9LQ31InterPro:IPR001229KEGG:ath:AT1G33790
OMA:GFWGYASPaxDb:Q9LQ31Pfam:PF01419Pfscan:PS51752PhylomeDB:Q9LQ31PIR:D86461PRIDE:Q9LQ31
PRO:PR:Q9LQ31PROSITE:PS51752ProteinModelPortal:Q9LQ31Proteomes:UP000006548RefSeq:NP_001154390.2RefSeq:NP_564427.1SMART:SM00915
SMR:Q9LQ31SUPFAM:SSF51101TAIR:AT1G33790UniGene:At.26396UniProt:F4HRA7UniProt:Q940R1
Coordinates (TAIR10) chr1:+:12256990..12260432
Molecular Weight (calculated) 48982.80 Da
IEP (calculated) 6.92
GRAVY (calculated) -0.42
Length 445 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQKLEAKGG KGGNQWDDLL DHDNIAKIHV QGGHEGIQYV KFDYVKFDNL KIGQPKLGSI HGLSRKGFTQ TFEIDPTNEH LVSVEGYYDE SKGLVQGLKF
101: KTNKKTSDMI GYDENGLKFS LEVNGKKIIG FHGYAQTYLN SLGAYFVTAP PTKFDYQGGS GAQLWDDGTN YNGVRKISFA LDANEIRQIR IDYDKGGLIE
201: RREYGGNVGR QEEFVVDYPS EYIIYMEGTC DIVSDASKNR VRSLMFKTSK GRTSPIFGKV AARKFVFESN GSALIGFHGR AAAAVDAIGA YFSRFILPPS
301: AETLQAKGGE GGDPWSDGVF NGVRNIYVGQ GENGVSAVKF VYDKDSQVAE GNDHGKPTLL GYEEFKLEYP SEYITTVEGC FDKIFGSGGG VITMLKFKTN
401: KRTSPPFGLE TTSNFVLGKE GYKIVGFHGT SSHELHQLGV YVMPI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)