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AT1G33600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:24393051 (2015): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction; LOCATED IN: cell wall, membrane, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT1G33590.1); Has 71591 Blast hits to 27926 proteins in 991 species: Archae - 22; Bacteria - 6296; Metazoa - 16731; Fungi - 641; Plants - 43101; Viruses - 4; Other Eukaryotes - 4796 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:AC069299EMBL:CP002684
EnsemblPlants:AT1G33600EnsemblPlants:AT1G33600.1entrez:840254Gene3D:3.80.10.10
GeneID:840254GO:GO:0005618GO:GO:0009505GO:GO:0016020
Gramene:AT1G33600.1hmmpanther:PTHR27000hmmpanther:PTHR27000:SF52HOGENOM:HOG000066206
InterPro:IPR001611InterPro:IPR003591InterPro:IPR013210InterPro:IPR032675
KEGG:ath:AT1G33600Pfam:PF00560Pfam:PF08263Pfam:PF13855
PhylomeDB:Q9FW48PIR:H86459Proteomes:UP000006548RefSeq:NP_174624.1
SMART:SM00369SMR:Q9FW48STRING:3702.AT1G33600.1SUPFAM:SSF52047
TAIR:AT1G33600UniGene:At.28157UniGene:At.67613UniProt:Q9FW48
Coordinates (TAIR10) chr1:+:12180776..12182212
Molecular Weight (calculated) 52473.90 Da
IEP (calculated) 9.27
GRAVY (calculated) 0.10
Length 478 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSCCFPLFI FAFVIFLRCL SPIEAATCHP DDEAGLLAFK SGITQDPTGI LSSWKKGTDC CSWKGVGCLT NRVTGLTING QSDVTGSFLS GTISPSLAKL
101: QHLVGIYFTN LRNITGSFPQ FLFQLPNVKQ VYFTNSRLSG PLPANIGALS ELGELSLDGN LFTGPIPSSI SNLTRLYLLN LGDNLLTGTI PLGLANLKIL
201: LSLNFGNNRL SETIPDIFKS MQKLQSLTLS RNKFSGNLPP SIASLKPILN YLDLSQNNLS GTIPTFLSNF KVLDSLDLSR NRFSGVVPKS LANMPKLFHL
301: NLSHNFLTGP LPAMKNVDGL ATLDLSYNQF HLKTIPKWVT SSPSMYSLKL VKCGINMSLD NWKPVRPNIY FYIDLSENEI SGSLTWFFNL AHNLYEFQAS
401: GNKLRFDMGK LNLSERLESL DLSRNLIFGK VPMTVAKLQK LNLSHNHLCG KLPVTKFPAS AFVGNDCLCG SPLSPCKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)