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AT1G33590.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:25805245 (2015): extracellular region plant-type cell wall
  • PMID:24393051 (2015): extracellular region
  • PMID:21109274 (2011): extracellular region
  • PMID:20423899 (2010): plastid
  • PMID:19334764 (2009): plasma membrane
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:16287169 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:15028209 (2004): plastid
  • PMID:14595688 (2003): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Leucine-rich repeat (LRR) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction, response to karrikin, defense response; LOCATED IN: cell wall, chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT1G33600.1); Has 74647 Blast hits to 28620 proteins in 1034 species: Archae - 16; Bacteria - 6743; Metazoa - 19007; Fungi - 704; Plants - 43140; Viruses - 2; Other Eukaryotes - 5035 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0619EMBL:CP002684EnsemblPlants:AT1G33590EnsemblPlants:AT1G33590.1entrez:840253Gene3D:3.80.10.10
GeneID:840253GO:GO:0005618GO:GO:0009505GO:GO:0009507GO:GO:0080167Gramene:AT1G33590.1hmmpanther:PTHR27000
hmmpanther:PTHR27000:SF52InParanoid:F4HR88InterPro:IPR001611InterPro:IPR003591InterPro:IPR013210InterPro:IPR032675KEGG:ath:AT1G33590
OMA:CLANCHVPaxDb:F4HR88Pfam:PF00560Pfam:PF08263Pfam:PF13855PRIDE:F4HR88ProteinModelPortal:F4HR88
Proteomes:UP000006548RefSeq:NP_564426.1SMART:SM00369SMR:F4HR88STRING:3702.AT1G33590.1SUPFAM:SSF52047SwissPalm:F4HR88
TAIR:AT1G33590UniGene:At.26728UniProt:F4HR88
Coordinates (TAIR10) chr1:+:12177788..12179221
Molecular Weight (calculated) 51744.90 Da
IEP (calculated) 9.23
GRAVY (calculated) 0.15
Length 477 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSSFTLFIF TFVIFLQCLN PTGAATCHPD DEAGLLAFKA GITRDPSGIL SSWKKGTACC SWNGVTCLTT DRVSALSVAG QADVAGSFLS GTLSPSLAKL
101: KHLDGIYFTD LKNITGSFPQ FLFQLPNLKY VYIENNRLSG TLPANIGALS QLEAFSLEGN RFTGPIPSSI SNLTLLTQLK LGNNLLTGTI PLGVANLKLM
201: SYLNLGGNRL TGTIPDIFKS MPELRSLTLS RNGFSGNLPP SIASLAPILR FLELGHNKLS GTIPNFLSNF KALDTLDLSK NRFSGVIPKS FANLTKIFNL
301: DLSHNLLTDP FPVLNVKGIE SLDLSYNQFH LNTIPKWVTS SPIIFSLKLA KCGIKMSLDD WKPAQTFYYD FIDLSENEIT GSPARFLNQT EYLVEFKAAG
401: NKLRFDMGKL TFAKTLTTLD ISRNLVFGKV PAMVAGLKTL NVSHNHLCGK LPVTKFPASA FVGNDCLCGS PLSPCKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)