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AT1G33440.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.937
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G59740.1); Has 6684 Blast hits to 6582 proteins in 1312 species: Archae - 0; Bacteria - 3263; Metazoa - 486; Fungi - 360; Plants - 2166; Viruses - 0; Other Eukaryotes - 409 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3104eggNOG:KOG1237EMBL:AC051630EMBL:AK221617EMBL:CP002684EnsemblPlants:AT1G33440EnsemblPlants:AT1G33440.1
entrez:840237GeneID:840237Genevisible:Q56XQ6GO:GO:0005215GO:GO:0005886GO:GO:0016021Gramene:AT1G33440.1
hmmpanther:PTHR11654hmmpanther:PTHR11654:SF171HOGENOM:HOG000237400InParanoid:Q56XQ6InterPro:IPR000109InterPro:IPR020846iPTMnet:Q56XQ6
KEGG:ath:AT1G33440OMA:THITKTFPANTHER:PTHR11654PaxDb:Q56XQ6Pfam:PF00854Pfam:Q56XQ6PhylomeDB:Q56XQ6
PIR:B86458PRIDE:Q56XQ6PRO:PR:Q56XQ6ProteinModelPortal:Q56XQ6Proteomes:UP000006548RefSeq:NP_174610.2SMR:Q56XQ6
STRING:3702.AT1G33440.1SUPFAM:SSF103473TAIR:AT1G33440TMHMM:TMhelixUniGene:At.49935UniProt:Q56XQ6
Coordinates (TAIR10) chr1:-:12127712..12130327
Molecular Weight (calculated) 66709.10 Da
IEP (calculated) 8.52
GRAVY (calculated) 0.25
Length 601 amino acids
Sequence (TAIR10)
(BLAST)
001: MDVHDLSEEA KRGVIHTSEE SLDDLCVDFR GRPCRPSKHG GTRAALFVLG FQAFEMMAIA AVGNNLITYV FNEMHFPLSK SANLVTNFIG TVFLLSLLGG
101: FLSDSYLGSF RTMLVFGVIE ISGFILLSVQ AHLPELRPPE CNMKSTTIHC VEANGYKAAT LYTALCLVAL GSGCLKPNII SHGANQFQRK DLRKLSSFFN
201: AAYFAFSMGQ LIALTLLVWV QTHSGMDVGF GVSAAVMAAG MISLVAGTSF YRNKPPSGSI FTPIAQVFVA AITKRKQICP SNPNMVHQPS TDLVRVKPLL
301: HSNKFRFLDK ACIKTQGKAM ESPWRLCTIE QVHQVKILLS VIPIFACTII FNTILAQLQT FSVQQGSSMN THITKTFQIP PASLQAIPYI ILIFFVPLYE
401: TFFVPLARKL TGNDSGISPL QRIGTGLFLA TFSMVAAALV EKKRRESFLE QNVMLSIFWI APQFLIFGLS EMFTAVGLVE FFYKQSSQSM QSFLTAMTYC
501: SYSFGFYLSS VLVSTVNRVT SSNGSGTKEG WLGDNDLNKD RLDHFYWLLA SLSFINFFNY LFWSRWYSCD PSATHHSAEV NSLEALENGE IKDSTTEKPR
601: I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)