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AT1G33340.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.905
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ENTH/ANTH/VHS superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ENTH/ANTH/VHS superfamily protein; FUNCTIONS IN: phospholipid binding, clathrin binding, binding, phosphatidylinositol binding; INVOLVED IN: clathrin coat assembly; LOCATED IN: clathrin coat; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942), Clathrin adaptor, phosphoinositide-binding, GAT-like (InterPro:IPR014712); BEST Arabidopsis thaliana protein match is: ENTH/ANTH/VHS superfamily protein (TAIR:AT5G57200.1); Has 380 Blast hits to 359 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 374; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQ90eggNOG:KOG0251EMBL:AC027035EMBL:AC051630
EMBL:AK176052EMBL:BT010651EMBL:CP002684EnsemblPlants:AT1G33340
EnsemblPlants:AT1G33340.1entrez:840228Gene3D:1.20.58.150Gene3D:1.25.40.90
GeneID:840228Genevisible:Q9C502GO:GO:0005545GO:GO:0005794
GO:GO:0005905GO:GO:0006897GO:GO:0030136GO:GO:0048268
Gramene:AT1G33340.1hmmpanther:PTHR22951hmmpanther:PTHR22951:SF14HOGENOM:HOG000243737
InParanoid:Q9C502InterPro:IPR008942InterPro:IPR011417InterPro:IPR013809
InterPro:IPR014712KEGG:ath:AT1G33340OMA:YFEQDLRPaxDb:Q9C502
Pfam:PF07651Pfam:Q9C502Pfscan:PS50942PhylomeDB:Q9C502
PIR:B86457PRIDE:Q9C502PRO:PR:Q9C502PROSITE:PS50942
ProteinModelPortal:Q9C502Proteomes:UP000006548RefSeq:NP_174602.1SMART:SM00273
STRING:3702.AT1G33340.1SUPFAM:SSF48464SUPFAM:SSF89009TAIR:AT1G33340
UniGene:At.39954UniProt:Q9C502
Coordinates (TAIR10) chr1:+:12087628..12088752
Molecular Weight (calculated) 42112.70 Da
IEP (calculated) 7.25
GRAVY (calculated) -0.16
Length 374 amino acids
Sequence (TAIR10)
(BLAST)
001: MRLDLSAKFR QVLGLAKDHA SIGRAIVQNY NEKAFFDIEV AVVRATSHDD CPVDDKTMHE ILFLVSNTPG SIPFLAEQIS RRLAKTRDCL VAGKTLLLFH
101: RLLRGSSRSI EQQLHIAHTS GHLQIGCSWF MMSLDSRSFV FLQNYVAYLQ ERVGWIINQA GKLEPVMSGG TKFSRYKEKS MDLVFHILPK CQEFIAQVLK
201: CSPVDAWPID NLVQAATGNI LKESFQVYMT YSDGMTALVS MLFDLSRPAR DLACGMLRKA SQQIQDLRIL YDKCRGFAGM KSLDYPSVQA ISMDHIVALE
301: ECSSYGGKRG FSLSTNLRDA ITCNELKQEQ HSASFSSTSP FSLPVETKIS MVWVVFDNED GEESDKQTEK AYER
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)