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AT1G33240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GT-2-like 1
Curator
Summary (TAIR10)
Encodes a plant transcriptional activator that contains two separate, but similar, trihelix DNA-binding domains, similar to GT-2. Gene is expressed in all aerial parts of the plant, with higher level of expression in siliques. At-GTL2 was thought to be a duplicated copy of this gene but is likely to be a cloning artefact, the result of a chimeric clone. Regulates ploidy-dependent cell growth in trichome.
Computational
Description (TAIR10)
GT-2-like 1 (GTL1); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT1G76890.2); Has 6156 Blast hits to 4698 proteins in 415 species: Archae - 8; Bacteria - 243; Metazoa - 2333; Fungi - 696; Plants - 1321; Viruses - 126; Other Eukaryotes - 1429 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IN2JeggNOG:ENOG410YBXGEMBL:AC021045EMBL:AC027035EMBL:AJ003215EMBL:AJ003216EMBL:AJ003218
EMBL:AY140085EMBL:BT008824EMBL:CP002684EnsemblPlants:AT1G33240EnsemblPlants:AT1G33240.1entrez:840218GeneID:840218
Genevisible:Q9C882GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0008361
GO:GO:0009414GO:GO:0010090GO:GO:0030308GO:GO:0032876GO:GO:0042631GO:GO:0043565GO:GO:0045892
GO:GO:2000037GO:GO:2000038hmmpanther:PTHR21654hmmpanther:PTHR21654:SF13HOGENOM:HOG000239660InParanoid:Q9C882InterPro:IPR001005
InterPro:IPR017877KEGG:ath:AT1G33240ncoils:CoilOMA:GNGHTEPPaxDb:Q9C882Pfam:PF13837Pfam:Q9C882
Pfscan:PS50090PhylomeDB:Q9C882PIR:B86456PRIDE:Q9C882PRO:PR:Q9C882PROSITE:PS50090ProteinModelPortal:Q9C882
Proteomes:UP000006548RefSeq:NP_174594.1SMART:SM00717SMR:Q9C882STRING:3702.AT1G33240.1TAIR:AT1G33240tair10-symbols:AT-GTL1
tair10-symbols:AT-GTL2tair10-symbols:GTL1UniGene:At.28206UniProt:Q9C882
Coordinates (TAIR10) chr1:-:12051859..12054320
Molecular Weight (calculated) 74216.90 Da
IEP (calculated) 5.85
GRAVY (calculated) -0.95
Length 669 amino acids
Sequence (TAIR10)
(BLAST)
001: MEQGGGGGGN EVVEEASPIS SRPPANNLEE LMRFSAAADD GGLGGGGGGG GGGSASSSSG NRWPREETLA LLRIRSDMDS TFRDATLKAP LWEHVSRKLL
101: ELGYKRSSKK CKEKFENVQK YYKRTKETRG GRHDGKAYKF FSQLEALNTT PPSSSLDVTP LSVANPILMP SSSSSPFPVF SQPQPQTQTQ PPQTHNVSFT
201: PTPPPLPLPS MGPIFTGVTF SSHSSSTASG MGSDDDDDDM DVDQANIAGS SSRKRKRGNR GGGGKMMELF EGLVRQVMQK QAAMQRSFLE ALEKREQERL
301: DREEAWKRQE MARLAREHEV MSQERAASAS RDAAIISLIQ KITGHTIQLP PSLSSQPPPP YQPPPAVTKR VAEPPLSTAQ SQSQQPIMAI PQQQILPPPP
401: PSHPHAHQPE QKQQQQPQQE MVMSSEQSSL PSSSRWPKAE ILALINLRSG MEPRYQDNVP KGLLWEEIST SMKRMGYNRN AKRCKEKWEN INKYYKKVKE
501: SNKKRPQDAK TCPYFHRLDL LYRNKVLGSG GGSSTSGLPQ DQKQSPVTAM KPPQEGLVNV QQTHGSASTE EEEPIEESPQ GTEKPEDLVM RELIQQQQQL
601: QQQESMIGEY EKIEESHNYN NMEEEEDQEM DEEELDEDEK SAAFEIAFQS PANRGGNGHT EPPFLTMVQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)