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AT1G33140.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L6 family
Curator
Summary (TAIR10)
Encodes ribosomal protein L9. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2.
Computational
Description (TAIR10)
PIGGYBACK2 (PGY2); FUNCTIONS IN: structural constituent of ribosome, rRNA binding; INVOLVED IN: adaxial/abaxial pattern formation, translation; LOCATED IN: cytosolic large ribosomal subunit, vacuole, large ribosomal subunit, membrane, chloroplast envelope; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein L6 (InterPro:IPR000702), Ribosomal protein L6, alpha-beta domain (InterPro:IPR020040), Ribosomal protein L6, conserved site-2 (InterPro:IPR002359); BEST Arabidopsis thaliana protein match is: Ribosomal protein L6 family (TAIR:AT1G33120.1); Has 1644 Blast hits to 1643 proteins in 495 species: Archae - 312; Bacteria - 169; Metazoa - 422; Fungi - 179; Plants - 339; Viruses - 0; Other Eukaryotes - 223 (source: NCBI BLink).
Protein Annotations
BioGrid:25442BioGrid:25445eggNOG:COG0097eggNOG:KOG3255
EMBL:AC021045EMBL:AF324688EMBL:AF326873EMBL:AF339694
EMBL:AF375419EMBL:AY039593EMBL:AY054156EMBL:AY058051
EMBL:AY072446EMBL:AY128910EMBL:CP002684EMBL:X91958
EMBL:Z17727EMBL:Z17728EnsemblPlants:AT1G33120.1EnsemblPlants:AT1G33140
EnsemblPlants:AT1G33140.1entrez:840208entrez:840211Gene3D:3.90.930.12
GeneID:840208GeneID:840211Genevisible:P49209GO:GO:0002181
GO:GO:0003723GO:GO:0003735GO:GO:0005730GO:GO:0005773
GO:GO:0005774GO:GO:0005829GO:GO:0005886GO:GO:0009506
GO:GO:0009507GO:GO:0009941GO:GO:0009955GO:GO:0016020
GO:GO:0019843GO:GO:0022625GO:GO:0022626Gramene:AT1G33120.1
Gramene:AT1G33140.1hmmpanther:PTHR11655hmmpanther:PTHR11655:SF18HOGENOM:HOG000039905
InParanoid:P49209IntAct:P49209InterPro:IPR000702InterPro:IPR002359
InterPro:IPR020040iPTMnet:P49209KEGG:ath:AT1G33120KEGG:ath:AT1G33140
KO:K02940OMA:LRVRKWFPANTHER:PTHR11655PaxDb:P49209
Pfam:P49209Pfam:PF00347PhylomeDB:P49209PIR:F86455
PIR:S71255PIRSF:PIRSF002162PRIDE:P49209PRO:PR:P49209
PROSITE:PS00700ProteinModelPortal:P49209Proteomes:UP000006548Reactome:R-ATH-156827
Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706Reactome:R-ATH-975956
Reactome:R-ATH-975957RefSeq:NP_564417.1RefSeq:NP_564418.1scanprosite:PS00700
SMR:P49209STRING:3702.AT1G33140.1SUPFAM:SSF56053TAIR:AT1G33120
TAIR:AT1G33140tair10-symbols:PGY2UniGene:At.22864UniGene:At.23014
UniGene:At.68560UniProt:P49209
Coordinates (TAIR10) chr1:+:12023360..12024502
Molecular Weight (calculated) 22018.90 Da
IEP (calculated) 10.14
GRAVY (calculated) -0.35
Length 194 amino acids
Sequence (TAIR10)
(BLAST)
001: MKTILSSETM DIPDSVTIKV HAKVIEVEGP RGKLVRDFKH LNLDFQLIKD PETGKKKLKI DSWFGTRKTS ASIRTALSHV DNLISGVTRG FRYKMRFVYA
101: HFPINASIGG DGKSIEIRNF LGEKKVRKVE MLDGVTIVRS EKVKDEIVLD GNDIELVSRS CALINQKCHV KKKDIRKFLD GIYVSEKSKI VEEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)