suba logo
AT1G33110.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
vacuole 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : MATE efflux family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G33100.1); Has 9952 Blast hits to 9876 proteins in 1988 species: Archae - 205; Bacteria - 7065; Metazoa - 140; Fungi - 326; Plants - 1371; Viruses - 0; Other Eukaryotes - 845 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0534eggNOG:KOG1347EMBL:AC021045EMBL:AY062756EMBL:AY114687EMBL:CP002684EnsemblPlants:AT1G33110
EnsemblPlants:AT1G33110.1entrez:840207ExpressionAtlas:Q8W488GeneID:840207Genevisible:Q8W488GO:GO:0015238GO:GO:0015297
GO:GO:0016021hmmpanther:PTHR11206hmmpanther:PTHR11206:SF102HOGENOM:HOG000177025IntAct:Q8W488InterPro:IPR002528OMA:ILMNSVQ
PaxDb:Q8W488Pfam:PF01554PhylomeDB:Q8W488PIR:B86455ProteinModelPortal:Q8W488Proteomes:UP000006548RefSeq:NP_174587.1
SMR:Q8W488STRING:3702.AT1G33110.1TAIR:AT1G33110TIGRfam:TIGR00797TIGRFAMs:TIGR00797TMHMM:TMhelixUniGene:At.15880
UniGene:At.67163UniProt:Q8W488
Coordinates (TAIR10) chr1:+:12005084..12008618
Molecular Weight (calculated) 53704.60 Da
IEP (calculated) 8.39
GRAVY (calculated) 0.71
Length 494 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGGGGELTA ALLKKTAENG GEEKDELGLK QKVWIESKKL WIVAAPAIFT RFSTFGVSII SQSFIGHLGP IELAAYSITF TVLLRFSNGI LLGMASALET
101: LCGQAYGAKQ NHMLGIYLQR SWIVLTGCTI CLTPVYIFSG PILLALGQEE RIVRVARIIA LWVIGINFSF VPSFTCQMFL QAQSKNKIIA YVAAVSLGVH
201: VFLSWLLMVH FNFGITGAMT STLVAFWLPN IAQLLFVTCG GCKDTWRGFS MMAFKDLWPV FKLSMSSGGM LCLELWYNSI LVLLTGNLKN AEVALDALAI
301: CLNINGLEMM IALGFLAAAS VRVSNELGSG NPKGAKFATL TAVFTSLSLG IVLFFVFLFL RGRVSYIFTT SEAVAAEVAD LSPLLAFSIL MNSVQPVLSG
401: VAVGAGWQGY VTYVNLACYY LVGIPIGIIL GYVVGLQVKG VWIGMLFGIF VQTCVLTVMT LRTDWDQQVS TSLRRLNRWV VPESRDVNQV SSEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)