suba logo
AT1G33040.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nascent polypeptide-associated complex subunit alpha-like protein 5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nascent polypeptide-associated complex subunit alpha-like protein 5 (NACA5); CONTAINS InterPro DOMAIN/s: Nascent polypeptide-associated complex, alpha subunit (InterPro:IPR016641), Nascent polypeptide-associated complex NAC (InterPro:IPR002715); BEST Arabidopsis thaliana protein match is: Nascent polypeptide-associated complex (NAC), alpha subunit family protein (TAIR:AT4G10480.2); Has 1445 Blast hits to 1356 proteins in 272 species: Archae - 13; Bacteria - 22; Metazoa - 643; Fungi - 256; Plants - 163; Viruses - 18; Other Eukaryotes - 330 (source: NCBI BLink).
Protein Annotations
BioGrid:25433eggNOG:COG1308eggNOG:KOG2239EMBL:AC006424
EMBL:AY045682EMBL:AY059164EMBL:AY084346EMBL:CP002684
EnsemblPlants:AT1G33040EnsemblPlants:AT1G33040.1entrez:840199GeneID:840199
Genevisible:Q8LGC6GO:GO:0015031Gramene:AT1G33040.1hmmpanther:PTHR21713
HOGENOM:HOG000239674InParanoid:Q8LGC6IntAct:Q8LGC6InterPro:IPR002715
InterPro:IPR016641KEGG:ath:AT1G33040ncoils:CoilOMA:GMKPVSD
PANTHER:PTHR21713PaxDb:Q8LGC6Pfam:PF01849Pfam:Q8LGC6
Pfscan:PS51151PhylomeDB:Q8LGC6PIR:A86455PIRSF:PIRSF015901
PRIDE:Q8LGC6PRO:PR:Q8LGC6PROSITE:PS51151ProteinModelPortal:Q8LGC6
Proteomes:UP000006548RefSeq:NP_564415.1SMART:SM01407SMR:Q8LGC6
STRING:3702.AT1G33040.1TAIR:AT1G33040tair10-symbols:NACA5UniGene:At.11961
UniGene:At.28625UniProt:Q8LGC6
Coordinates (TAIR10) chr1:+:11966547..11967696
Molecular Weight (calculated) 22781.40 Da
IEP (calculated) 4.03
GRAVY (calculated) -0.63
Length 209 amino acids
Sequence (TAIR10)
(BLAST)
001: MPGAIVEEEK SQIESIKEQL KLEKEDDVVV EDVKDGEEED DDEDDEDVEV EGEGGNENAK QSRSEKKSRK AVLKLGMKPV SDVSRVTIKR AKNVLFVISK
101: PDVYKSPNAE TYVIFGEAKV DDLSSQLQTQ AAQRFKMPDV TSMLPNAGSE ATMAPLAEEE DEDDVDDTGV EARDIDLVMT QAGVSKAKAV SALKANDGDI
201: VSAIMELTT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)