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AT1G32990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plastid ribosomal protein l11
Curator
Summary (TAIR10)
mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Plastid Ribosomal Protein L11
Computational
Description (TAIR10)
plastid ribosomal protein l11 (PRPL11); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L11, C-terminal domain (InterPro:IPR020783), Ribosomal protein L11, bacterial-type (InterPro:IPR006519), Ribosomal protein L11, N-terminal domain (InterPro:IPR020784), Ribosomal protein L11, conserved site (InterPro:IPR020785), Ribosomal protein L11 (InterPro:IPR000911); BEST Arabidopsis thaliana protein match is: Ribosomal protein L11 family protein (TAIR:AT5G51610.1); Has 8526 Blast hits to 8526 proteins in 2812 species: Archae - 305; Bacteria - 5419; Metazoa - 123; Fungi - 122; Plants - 106; Viruses - 0; Other Eukaryotes - 2451 (source: NCBI BLink).
Protein Annotations
BioGrid:25428eggNOG:COG0080eggNOG:KOG3257EMBL:AC006424EMBL:AF325023EMBL:AF370254EMBL:AF412105
EMBL:AY063070EMBL:AY085664EMBL:CP002684EnsemblPlants:AT1G32990EnsemblPlants:AT1G32990.1entrez:840194Gene3D:1.10.10.250
Gene3D:3.30.1550.10GeneID:840194Genevisible:Q9MAP3GO:GO:0000027GO:GO:0003735GO:GO:0005762GO:GO:0006412
GO:GO:0009507GO:GO:0009570GO:GO:0009941GO:GO:0016020GO:GO:0019843GO:GO:0022626Gramene:AT1G32990.1
HAMAP:MF_00736hmmpanther:PTHR11661hmmpanther:PTHR11661:SF7HOGENOM:HOG000082123InParanoid:Q9MAP3InterPro:IPR000911InterPro:IPR006519
InterPro:IPR020783InterPro:IPR020784InterPro:IPR020785KEGG:ath:AT1G32990KO:K02867OMA:NWAKGVEPANTHER:PTHR11661
PaxDb:Q9MAP3Pfam:PF00298Pfam:PF03946Pfam:Q9MAP3PhylomeDB:Q9MAP3PIR:E86454PRIDE:Q9MAP3
PRO:PR:Q9MAP3PROSITE:PS00359ProteinModelPortal:Q9MAP3Proteomes:UP000006548RefSeq:NP_174575.1scanprosite:PS00359SMART:SM00649
SMR:Q9MAP3STRING:3702.AT1G32990.1SUPFAM:SSF46906SUPFAM:SSF54747TAIR:AT1G32990tair10-symbols:PRPL11TIGRfam:TIGR01632
TIGRFAMs:TIGR01632UniGene:At.1364UniProt:Q9MAP3
Coordinates (TAIR10) chr1:+:11955827..11957139
Molecular Weight (calculated) 23149.50 Da
IEP (calculated) 10.39
GRAVY (calculated) 0.10
Length 222 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSLSTLC SSTSSSLHPN SKLSHSLSAK LSSKANVSVQ FLGKKQSPLL SSTPRFLTVI AMAPPKPGGK AKKVVGVIKL ALEAGKATPA PPVGPALGSK
101: GVNIMAFCKD YNARTADKAG YIIPVEITVF DDKSFTFILK TPPASVLLLK AAGVEKGSKD PQQDKVGVIT IDQLRTIAAE KLPDLNCTTI ESAMRIIAGT
201: AANMGIDIDP PILEPKKKAV LL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)