AT1G32940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Subtilase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SBT3.5; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: apoplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT1G32960.1); Has 6590 Blast hits to 6094 proteins in 1001 species: Archae - 208; Bacteria - 3597; Metazoa - 86; Fungi - 174; Plants - 1956; Viruses - 0; Other Eukaryotes - 569 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:11937634..11940856 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82916.80 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.24 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.05 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 774 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRNCRVLLVL VLSLVIVLNV VRASDESKVH IVYLGEKQHD DPEFVSESHH QMLSSLLGSK VDAHESMVYS YRHGFSGFAA KLTESQAKKL ADSPEVVHVM 101: ADSFYELATT RTWDYLGLSV ANPNNLLNDT NMGDQVIIGF IDTGVWPESE SFNDNGVGPI PSHWKGGCES GEKFISTNCN RKLIGAKYFI NGFLAENEGF 201: NTTESRDYIS ARDFIGHGTH TASIAGGSFV PNISYKGLAG GNLRGGAPRA RIAIYKACWY VDQLGAVACS SSDILKAMDE SMHDGVDVLS LSLGAQIPLY 301: PETDLRDRIA TGAFHAVAKG IIVVCAGGNS GPAAQTVLNT APWIITVAAT TLDRSFPTPI TLGNRKVILG QALYTGQELG FTSLVYPENA GFTNETFSGV 401: CERLNLNPNR TMAGKVVLCF TTNTLFTAVS RAASYVKAAG GLGVIIARNP GYNLTPCRDD FPCVAIDYEL GTDVLLYIRS TRSPVVKIQP SRTLVGQPVG 501: TKVATFSSRG PNSISPAILK PDIGAPGVSI LAATSPDSNS SVGGFDILAG TSMAAPVVAG VVALLKALHP NWSPAAFRSA IVTTAWRTDP FGEQIFAEGS 601: SRKVADPFDY GGGIVNPEKA ADPGLIYDMG PRDYILYLCS AGYNDSSITQ LVGNVTVCST PKTSVLDVNL PSITIPDLKD EVTLTRTVTN VGTVDSVYKV 701: VVEPPLGIQV VVAPETLVFN SKTKNVSFTV RVSTTHKINT GFYFGNLIWT DSMHNVTIPV SVRTQILQNY YDEN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)