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AT1G32870.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NAC domain protein 13
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAC domain protein 13 (NAC13); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 16 (TAIR:AT1G34180.1); Has 2951 Blast hits to 2946 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 2931; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTU5eggNOG:ENOG41107IBEMBL:AC006424EMBL:AY034959EMBL:CP002684EnsemblPlants:AT1G32870EnsemblPlants:AT1G32870.1
EnsemblPlants:AT1G32870.2entrez:840181ExpressionAtlas:F4IED2GeneID:840181Genevisible:F4IED2GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0005737GO:GO:0005789GO:GO:0006351GO:GO:0010114GO:GO:0010224GO:GO:0016021
GO:GO:0031930GO:GO:1900409Gramene:AT1G32870.2InParanoid:F4IED2IntAct:F4IED2InterPro:IPR003441KEGG:ath:AT1G32870
OMA:MHEYTLHPaxDb:F4IED2Pfam:F4IED2Pfam:PF02365Pfscan:PS51005PIR:E86453PRIDE:F4IED2
PRO:PR:F4IED2PROSITE:PS51005ProteinModelPortal:F4IED2Proteomes:UP000006548RefSeq:NP_001117401.1RefSeq:NP_564410.1SMR:F4IED2
STRING:3702.AT1G32870.1SUPFAM:SSF101941TAIR:AT1G32870tair10-symbols:ANAC013tair10-symbols:ANAC13tair10-symbols:NAC13TMHMM:TMhelix
UniGene:At.11970UniProt:F4IED2
Coordinates (TAIR10) chr1:+:11911745..11913692
Molecular Weight (calculated) 59324.70 Da
IEP (calculated) 4.77
GRAVY (calculated) -0.76
Length 528 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLSVENGGL APGFRFHPTD EELVVYYLKR KIRRKKLRVE AIGETDVYKF DPEELPEKAL YKTRDRQWFF FSLRDRKHGS RSSRATERGY WKATGKDRVI
101: HCDSRPVGEK KTLVFHRGRA PNGERTNWVM HEYTLHKEEL KRCGGEDVKD AYVLYKIYKK SGSGPKNGEQ YGAPFIEEEW AEDDDDDVDE PANQLVVSAS
201: VDNSLWGKGL NQSELDDNDI EELMSQVRDQ SGPTLQQNGV SGLNSHVDTY NLENLEEDMY LEINDLMEPE PEPTSVEVME NNWNEDGSGL LNDDDFVGAD
301: SYFLDLGVTN PQLDFVSGDL KNGFAQSLQV NTSLMTYQAN NNQFQQQSGK NQASNWPLRN SYTRQINNGS SWVQELNNDG LTVTRFGEAP GTGDSSEFLN
401: PVPSGISTTN EDDPSKDESS KFASSVWTFL ESIPAKPAYA SENPFVKLNL VRMSTSGGRF RFTSKSTGNN VVVMDSDSAV KRNKSGGNND KKKKKNKGFF
501: CLSIIGALCA LFWVIIGTMG GSGRPLLW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)