suba logo
AT1G32700.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.949
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : PLATZ transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLATZ transcription factor family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT4G17900.1); Has 399 Blast hits to 399 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 399; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFY5eggNOG:ENOG410YD1CEMBL:CP002684EnsemblPlants:AT1G32700EnsemblPlants:AT1G32700.1entrez:840164ExpressionAtlas:F4IEB6
GeneID:840164Gramene:AT1G32700.1hmmpanther:PTHR31065hmmpanther:PTHR31065:SF2InParanoid:F4IEB6InterPro:IPR006734KEGG:ath:AT1G32700
OMA:FHKDHHAPaxDb:F4IEB6Pfam:PF04640Proteomes:UP000006548RefSeq:NP_564406.1STRING:3702.AT1G32700.1TAIR:AT1G32700
UniGene:At.16977UniProt:F4IEB6
Coordinates (TAIR10) chr1:+:11827588..11829444
Molecular Weight (calculated) 24316.20 Da
IEP (calculated) 9.46
GRAVY (calculated) -0.52
Length 213 amino acids
Sequence (TAIR10)
(BLAST)
001: MGAEEETNKT YPHWLKPLLR EKFFVQCKLH ADSHKSECNM YCLDCTNGPL CSLCLSFHKD HHAIQIRRSS YHDVIRVSEI QKFLDITGVQ TYVINSAKVV
101: FLNERPQPRP GKGVINTCEV CYRSLVDSFR FCSLGCKISG ISKKKRKEWT NNLSDSDDSY SSTSIGRLKK NDDIMNNSFT PSTPPLSAVN RRIAKRRKGI
201: PHRAPFGGLI IEY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)