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AT1G32550.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2Fe-2S ferredoxin-like superfamily protein
Curator
Summary (TAIR10)
Encodes FdC1, a ferredoxin protein capable of alternative electron partitioning. FdC1 level increases in conditions of acceptor limitation at PSI.
Computational
Description (TAIR10)
2Fe-2S ferredoxin-like superfamily protein; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding; INVOLVED IN: electron transport chain; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Ferredoxin [2Fe-2S], plant (InterPro:IPR010241), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: ferredoxin 3 (TAIR:AT2G27510.1); Has 4986 Blast hits to 4984 proteins in 1076 species: Archae - 133; Bacteria - 3265; Metazoa - 6; Fungi - 1; Plants - 617; Viruses - 5; Other Eukaryotes - 959 (source: NCBI BLink).
Protein Annotations
EMBL:AC055769EMBL:AY080800EMBL:AY114079EMBL:CP002684
EnsemblPlants:AT1G32550EnsemblPlants:AT1G32550.1entrez:840149ExpressionAtlas:Q9C7Y4
Gene3D:3.10.20.30GeneID:840149GO:GO:0009055GO:GO:0022900
GO:GO:0046872GO:GO:0051537Gramene:AT1G32550.1hmmpanther:PTHR19370
hmmpanther:PTHR19370:SF109HOGENOM:HOG000217152InterPro:IPR001041InterPro:IPR010241
InterPro:IPR012675Pfam:PF00111Pfscan:PS51085PhylomeDB:Q9C7Y4
PIR:A86451PROSITE:PS51085Proteomes:UP000006548RefSeq:NP_174533.1
SMR:Q9C7Y4SUPFAM:SSF54292TAIR:AT1G32550tair10-symbols:FdC1
TIGRfam:TIGR02008TIGRFAMs:TIGR02008UniGene:At.20012UniProt:Q9C7Y4
Coordinates (TAIR10) chr1:-:11771969..11774117
Molecular Weight (calculated) 20378.20 Da
IEP (calculated) 5.63
GRAVY (calculated) -0.29
Length 181 amino acids
Sequence (TAIR10)
(BLAST)
001: MALILPCTFC TSLQKKNFPI NRRYITNFRR GATTATCEFR IPVEVSTPSD RGSLVVPSHK VTVHDRQRGV VHEFEVPEDQ YILHSAESQN ISLPFACRHG
101: CCTSCAVRVK SGELRQPQAL GISAELKSQG YALLCVGFPT SDLEVETQDE DEVYWLQFGR YFARGPIERD DYALELAMGD E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)