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AT1G32500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : non-intrinsic ABC protein 6
Curator
Summary (TAIR10)
Encodes a member of a heterogenous group of non-intrinsic ATP-binding cassette (ABC) proteins. Members of this group bear no close resemblance to each other nor to representatives of specific ABC protein subfamilies from other organisms. This grouping is arbitrary and will likely change upon acquisition of further data.
Computational
Description (TAIR10)
non-intrinsic ABC protein 6 (NAP6); CONTAINS InterPro DOMAIN/s: SUF system FeS cluster assembly, SufBD (InterPro:IPR000825); BEST Arabidopsis thaliana protein match is: ATP binding cassette protein 1 (TAIR:AT4G04770.1); Has 9763 Blast hits to 9763 proteins in 1806 species: Archae - 246; Bacteria - 6215; Metazoa - 1; Fungi - 6; Plants - 107; Viruses - 0; Other Eukaryotes - 3188 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0719eggNOG:ENOG410IHDKEMBL:AC007767EMBL:AY086585EMBL:CP002684EnsemblPlants:AT1G32500EnsemblPlants:AT1G32500.1
entrez:840144ExpressionAtlas:Q9LQK7GeneID:840144Genevisible:Q9LQK7GO:GO:0005215GO:GO:0006810GO:GO:0009507
GO:GO:0009536GO:GO:0009570GO:GO:0009793GO:GO:0010027GO:GO:0016226Gramene:AT1G32500.1hmmpanther:PTHR30508
hmmpanther:PTHR30508:SF3HOGENOM:HOG000069115InParanoid:Q9LQK7IntAct:Q9LQK7InterPro:IPR000825InterPro:IPR011542iPTMnet:Q9LQK7
KEGG:ath:AT1G32500KO:K09015OMA:TPWPSRKPaxDb:Q9LQK7Pfam:PF01458Pfam:Q9LQK7PhylomeDB:Q9LQK7
PIR:D86450PRIDE:Q9LQK7PRO:PR:Q9LQK7ProteinModelPortal:Q9LQK7Proteomes:UP000006548RefSeq:NP_564404.1SMR:Q9LQK7
STRING:3702.AT1G32500.1SUPFAM:0044748TAIR:AT1G32500tair10-symbols:ATNAP6tair10-symbols:NAP6TIGRfam:TIGR01981TIGRFAMs:TIGR01981
UniGene:At.40131UniProt:Q058Q9UniProt:Q9LQK7
Coordinates (TAIR10) chr1:-:11750091..11751994
Molecular Weight (calculated) 52827.50 Da
IEP (calculated) 5.83
GRAVY (calculated) -0.32
Length 475 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAATVLGRL SLIPNLSSKP KLKSNRRTTS TSVSVRAQAS FSDPFVLQLA ESLEDSLSAS PSSSLPLQRI RDSSAETLLS TPWPSRKDEP FRFTDTSLIR
101: SSQIEPISTQ QRNSEILDNL TETQFTNAVI IDGFVSNLTI GPSDLPDGVY FGKYSGLPDE LTNRISEFIG NFDSGDLFWS INGMGAPDLM VIYVPEGCKV
201: ENPIYLRYFS GETGDRESKR LPVSNPRVFV LVEEGGEIGI VEEFVGKDEE GFYWTNPVLE VVVQKNAKLK HSYLQKESMA SAHIKWTFVR QEAESEYELV
301: EVSTGGKLGR HNVHVQQLGP DTLTELTTFH MCVNEQTLDL HSKIILDHPR GASRQLHKCI VAHSSGQAVF DGNVRVNRFA QQTNAGQLTR SLLLKPRATV
401: NIKPNLQIIA DDVKCSHGAA ISDLEEDQLF YFQARGIDLE TARRALISSF GSEVIEKFPN REIRDQARNH VKGLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)