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AT1G32490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA helicase family protein
Curator
Summary (TAIR10)
Encodes a homolog of the yeast PRP2 protein, one of four related DEAH RNA helicases identified as essential cofactors for RNA splicing.
Computational
Description (TAIR10)
ENHANCED SILENCING PHENOTYPE 3 (ESP3); FUNCTIONS IN: helicase activity, ATP-dependent RNA helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: RNA splicing, posttranscriptional gene silencing by RNA, embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase domain-containing protein (TAIR:AT2G35340.1); Has 34186 Blast hits to 25955 proteins in 2213 species: Archae - 99; Bacteria - 5536; Metazoa - 12019; Fungi - 3203; Plants - 1844; Viruses - 1463; Other Eukaryotes - 10022 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-451-MONOMERBioCyc:ARA:GQT-452-MONOMEREC:3.6.4.13eggNOG:COG1643EMBL:AC007767EMBL:AY074318EMBL:AY133872
EMBL:CP002684EnsemblPlants:AT1G32490EnsemblPlants:AT1G32490.1entrez:840143ExpressionAtlas:Q8VY00Gene3D:3.40.50.300GeneID:840143
GO:GO:0004004GO:GO:0005524GO:GO:0005681GO:GO:0006396GO:GO:0006397GO:GO:0008380GO:GO:0016020
GO:GO:0035194GO:GO:0044822hmmpanther:PTHR18934hmmpanther:PTHR18934:SF117HOGENOM:HOG000175261IntAct:Q8VY00InterPro:IPR001650
InterPro:IPR002464InterPro:IPR007502InterPro:IPR011709InterPro:IPR014001InterPro:IPR027417iPTMnet:Q8VY00ncoils:Coil
OMA:QMSSAVFPfam:PF00271Pfam:PF04408Pfam:PF07717Pfscan:PS51192Pfscan:PS51194PhylomeDB:Q8VY00
PIR:C86450PRIDE:Q9LQK8PROSITE:PS00690PROSITE:PS51192PROSITE:PS51194ProteinModelPortal:Q8VY00Proteomes:UP000006548
RefSeq:NP_174527.2scanprosite:PS00690SMART:SM00487SMART:SM00490SMART:SM00847SMR:Q8VY00STRING:3702.AT1G32490.1
SUPFAM:SSF52540TAIR:AT1G32490tair10-symbols:EMB2733tair10-symbols:ESP3UniGene:At.40132UniProt:Q8VY00
Coordinates (TAIR10) chr1:-:11742356..11749286
Molecular Weight (calculated) 118838.00 Da
IEP (calculated) 5.92
GRAVY (calculated) -0.58
Length 1044 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASNDLKTWV SDKLMMLLGY SQAAVVNYLI AMAKKTKSPT ELVGELVDYG FSSSGDTRSF AEEIFARVPR KTAGVNLYQK HEAEAAMLVR KQKTYALLDA
0101: DDDEDEVVVE KKSSVSESRK SDKGKKRFRK KSGQSDESDG EVAVREDSRH VRRKVSEEDD GSESEEERVR DQKEREELEQ HLKDRDTART RKLTEQTLSK
0201: KEKEEAVRRA NALEKDDLYS LRKVSRQEYL KKREQKKLDE LRDEIEDEQY LFGGEKLTET ELREFRYKKE LYDLVKKRTQ DEDNVEEYRI PDAYDQEGGV
0301: DQEKRFSVAV QRYRDLDSTE KMNPFAEQEA WEDHQIGKAT LKFGAKNKQA SDDYQFVFED QINFIKESVM AGENYEDAMD AKQKSQDLAE KTALEELQEV
0401: RRSLPIYTYR DQLLKAVEEH QVLVIVGDTG SGKTTQIPQY LHEAGYTKRG KVGCTQPRRV AAMSVAARVA QEMGVKLGHE VGYSIRFEDC TSDKTVLKYM
0501: TDGMLLRELL GEPDLASYSV VIVDEAHERT LSTDILFGLV KDIARFRPDL KLLISSATMD AEKFSDYFDT APIFSFPGRR YPVEINYTSA PEADYMDAAI
0601: VTILTIHVRE PLGDILVFFT GQEEIETAEE ILKHRIRGLG TKIRELIICP IYANLPSELQ AKIFEPTPEG ARKVVLATNI AETSLTIDGI KYVVDPGFSK
0701: MKSYNPRTGM ESLLITPISK ASATQRAGRA GRTSPGKCYR LYTAFNYNND LEENTVPEVQ RTNLASVVLA LKSLGIHDLI NFDFMDPPPA EALVKSLELL
0801: FALGALNKLG ELTKAGRRMA EFPLDPMLSK MIVVSDKYKC SDEIISIAAM LSIGGSIFYR PKDKQVHADN ARMNFHTGNV GDHIALLKVY SSWKETNFST
0901: QWCYENYIQV RSMKRARDIR DQLEGLLERV EIDISSNLNE LDSVRKSIVA GFFPHTAKLQ KNGSYRTVKH PQTVHIHPNS GLSQVLPRWV VYHELVLTSK
1001: EYMRQVTELK PEWLIELAPH YYQLKDVEDA ASKKMPKGAG KAAM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)