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AT1G32450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nitrate transporter 1.5
Curator
Summary (TAIR10)
Transmembrane nitrate transporter. Involved in xylem transport of nitrate from root to shoot. Induced in response to nitrate. Not involved in nitrate uptake. expressed in root pericycle cells.
Computational
Description (TAIR10)
nitrate transporter 1.5 (NRT1.5); CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: NITRATE TRANSPORTER 1.8 (TAIR:AT4G21680.1); Has 7755 Blast hits to 7381 proteins in 1434 species: Archae - 0; Bacteria - 3851; Metazoa - 707; Fungi - 433; Plants - 2214; Viruses - 0; Other Eukaryotes - 550 (source: NCBI BLink).
Protein Annotations
BioGrid:25373eggNOG:COG3104eggNOG:KOG1237EMBL:AC007767EMBL:BX841204EMBL:CP002684EnsemblPlants:AT1G32450
EnsemblPlants:AT1G32450.1entrez:840139GeneID:840139Genevisible:Q9LQL2GO:GO:0005886GO:GO:0010150GO:GO:0010167
GO:GO:0015112GO:GO:0015293GO:GO:0015706GO:GO:0016021GO:GO:0055075Gramene:AT1G32450.1hmmpanther:PTHR11654
hmmpanther:PTHR11654:SF121HOGENOM:HOG000237400InParanoid:Q9LQL2InterPro:IPR000109InterPro:IPR020846KEGG:ath:AT1G32450OMA:WRLCPIS
PANTHER:PTHR11654PaxDb:Q9LQL2Pfam:PF00854Pfam:Q9LQL2PhylomeDB:Q9LQL2PIR:G86449PRIDE:Q9LQL2
PRO:PR:Q9LQL2ProteinModelPortal:Q9LQL2Proteomes:UP000006548RefSeq:NP_174523.2SMR:Q9LQL2STRING:3702.AT1G32450.1SUPFAM:SSF103473
TAIR:AT1G32450tair10-symbols:NRT1.5TCDB:2.A.17.3.19TMHMM:TMhelixUniGene:At.43846UniProt:Q9LQL2
Coordinates (TAIR10) chr1:-:11715337..11719807
Molecular Weight (calculated) 68702.90 Da
IEP (calculated) 5.41
GRAVY (calculated) 0.08
Length 614 amino acids
Sequence (TAIR10)
(BLAST)
001: MSCLEIYNKD TMKKKEGEEE TRDGTVDYYG RPSIRSNSGQ WVAGIVILLN QGLATLAFFG VGVNLVLFLT RVLQQNNADA ANNVSKWTGT VYIFSLVGAF
101: LSDSYWGRYK TCAIFQVIFV IGLSSLSLSS YMFLIRPRGC GDEVTPCGSH SMMEITMFYF SIYLIALGYG GYQPNIATLG ADQFDEEHPK EGYSKIAFFS
201: YFYLALNLGS LFSNTILGYF EDEGMWALGF WASTGSAIIG LILFLVGTPR YRYFKPTGNP LSRFCQVLVA ATKKSSVEAP LRGREEMYDG DSEGKNASVN
301: TGRRIVHTDE FKFLDKAAYI TARDLDDKKQ DSVNPWRLCP VTQVEEVKCI LRLMPIWLCT IIYSVVFTQM ASLFVEQGAA MNTSVSDFKI PPASMSSFDI
401: LSVALFIFLY RRVLEPVANR FKKNGSKGIT ELHRMGIGLV IAVIAMIAAG IVECYRLKYA DKSCTHCDGS SSLSIFWQAP QYSLIGASEV FMYVGQLEFF
501: NAQTPDGLKS FGSALCMMSM SMGNFVSSLL VTMVVKISTE DHMPGWIPRN LNKGHLDRFY FLLAALTSID LVVYIACAKW YKPIQLEGKD EMQDMSDDDY
601: DTESEEEREK DSKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)