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AT1G32410.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Vacuolar protein sorting 55 (VPS55) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Vacuolar protein sorting 55 (VPS55) family protein; FUNCTIONS IN: transporter activity; INVOLVED IN: transport; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting 55 (InterPro:IPR007262); BEST Arabidopsis thaliana protein match is: Vacuolar protein sorting 55 (VPS55) family protein (TAIR:AT3G11530.2); Has 430 Blast hits to 430 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 181; Fungi - 137; Plants - 85; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Protein Annotations
BioGrid:25368eggNOG:ENOG4111UCZeggNOG:KOG2174EMBL:AC007767
EMBL:AF361848EMBL:AK176917EMBL:AK230417EMBL:AY066053
EMBL:AY086458EMBL:CP002684EnsemblPlants:AT1G32410EnsemblPlants:AT1G32410.1
EnsemblPlants:AT1G32410.2EnsemblPlants:AT1G32410.3EnsemblPlants:AT1G32410.4EnsemblPlants:AT1G32410.5
entrez:840134GeneID:840134Genevisible:Q9AST6GO:GO:0005773
GO:GO:0010008GO:GO:0015031GO:GO:0016021Gramene:AT1G32410.1
Gramene:AT1G32410.2Gramene:AT1G32410.3Gramene:AT1G32410.4Gramene:AT1G32410.5
hmmpanther:PTHR12050hmmpanther:PTHR12050:SF1HOGENOM:HOG000038515InParanoid:Q9AST6
IntAct:Q9AST6InterPro:IPR007262KEGG:ath:AT1G32410OMA:TSACIEF
PANTHER:PTHR12050PaxDb:Q9AST6Pfam:PF04133Pfam:Q9AST6
PhylomeDB:Q9AST6PIR:B86449PRIDE:Q9AST6PRO:PR:Q9AST6
ProteinModelPortal:Q9AST6Proteomes:UP000006548RefSeq:NP_001077643.1RefSeq:NP_001077644.1
RefSeq:NP_001077645.1RefSeq:NP_564400.1RefSeq:NP_849741.1STRING:3702.AT1G32410.1
TAIR:AT1G32410TMHMM:TMhelixUniGene:At.15526UniProt:Q9AST6
Coordinates (TAIR10) chr1:+:11694398..11695297
Molecular Weight (calculated) 15025.50 Da
IEP (calculated) 4.19
GRAVY (calculated) 0.95
Length 140 amino acids
Sequence (TAIR10)
(BLAST)
001: MADVPGYLRT CLDMGKIAFL AILVSTGIVL QILACALFNN WWPMLSVIMY VLLPMPLLFF GGSDSTSLFN ESDNSWINAA KFLTGASAVG SVAIPSILKH
101: AGLIGWGALA LDLSSYVVFL VAILGYICIG DASDNYYSYI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)