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AT1G32400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
vacuole 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:12514140 (2003): plant-type vacuole
  • PMID:30962257 (2019): plastid
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tobamovirus multiplication 2A
Curator
Summary (TAIR10)
TOM2A encodes a 280 amino acid putative four-pass transmembrane protein with a C-terminal farnesylation signal, essential for efficient multiplication of tobacco mosaic viruses.
Computational
Description (TAIR10)
tobamovirus multiplication 2A (TOM2A); FUNCTIONS IN: protein binding; INVOLVED IN: viral replication complex formation and maintenance; LOCATED IN: vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: Tetraspanin family protein (TAIR:AT2G20230.1); Has 929 Blast hits to 927 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 729; Fungi - 0; Plants - 163; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink).
Protein Annotations
BioGrid:25367eggNOG:ENOG410IIVTeggNOG:ENOG4111KWCEMBL:AB085684
EMBL:AC007767EMBL:AF334723EMBL:AF385687EMBL:AK221090
EMBL:AY088560EMBL:CP002684EnsemblPlants:AT1G32400EnsemblPlants:AT1G32400.1
EnsemblPlants:AT1G32400.2EnsemblPlants:AT1G32400.3entrez:840133GeneID:840133
Genevisible:Q9C5W7GO:GO:0005773GO:GO:0005794GO:GO:0005886
GO:GO:0009506GO:GO:0009705GO:GO:0016020GO:GO:0016021
GO:GO:0043621GO:GO:0046786Gramene:AT1G32400.1Gramene:AT1G32400.2
Gramene:AT1G32400.3hmmpanther:PTHR19282hmmpanther:PTHR19282:SF262HOGENOM:HOG000029054
InParanoid:Q9C5W7IntAct:Q9C5W7InterPro:IPR018499iPTMnet:Q9C5W7
KEGG:ath:AT1G32400OMA:SSRNDAWPaxDb:Q9C5W7Pfam:PF00335
Pfam:Q9C5W7PhylomeDB:Q9C5W7PIR:A86449PRIDE:Q9C5W7
PRO:PR:Q9C5W7ProMEX:Q9C5W7Proteomes:UP000006548RefSeq:NP_001031127.1
RefSeq:NP_564399.1RefSeq:NP_973952.1STRING:3702.AT1G32400.1SwissPalm:Q9C5W7
TAIR:AT1G32400tair10-symbols:TOM2ATMHMM:TMhelixUniGene:At.15525
UniProt:Q9C5W7
Coordinates (TAIR10) chr1:-:11689393..11690873
Molecular Weight (calculated) 31557.30 Da
IEP (calculated) 5.10
GRAVY (calculated) 0.22
Length 280 amino acids
Sequence (TAIR10)
(BLAST)
001: MACRGCLECL LKLLNFLLAV AGLGMIGYGI YLFVEYKRVT DNSVTFDLTN GDQSYVSFGR PILMAVSLSS NIFDNLPKAW FIYLFIGIGV ALFVISCCGC
101: VGTCSRSVCC LSCYSLLLIL LILVELGFAA FIFFDNSWRD ELPSDRTGNF DTIYNFLREN WKIVRWVALG AVVFEALLFL LALMVRAANT PAEYDSDDEY
201: LAPRQQIRQP FINRQAAPVT GVPVAPTLDQ RPSRSDPWSA RMREKYGLDT SEFTYNPSES HRFQQMPAQP NEEKGRCTIM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)