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AT1G32230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28003327 (2017): extracellular region apoplast
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : WWE protein-protein interaction domain protein family
Curator
Summary (TAIR10)
Encodes a protein belonging to the (ADP-ribosyl)transferase domain-containing subfamily of WWE protein-protein interaction domain protein family. Superoxide radicals are necessary and sufficient to propagate cell death or lesion formation in rcd1 mutants. Without stress treatment, RCD1 is localized in the nucleus. Under high salt or oxidative stress, RCD1 is found not only in the nucleus but also in the cytoplasm.
Computational
Description (TAIR10)
RADICAL-INDUCED CELL DEATH1 (RCD1); CONTAINS InterPro DOMAIN/s: WWE domain (InterPro:IPR004170), Poly(ADP-ribose) polymerase, catalytic domain (InterPro:IPR012317), RST domain of plant C-terminal (InterPro:IPR022003); BEST Arabidopsis thaliana protein match is: similar to RCD one 1 (TAIR:AT2G35510.1); Has 179 Blast hits to 178 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 168; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
EC:2.4.2.30eggNOG:ENOG410IHK4eggNOG:ENOG410YCU9EMBL:HE802906EMBL:HE802907EMBL:HE802909EMBL:HE802910
EMBL:HE802912EMBL:HE802914EMBL:HE802916EMBL:HE802918EMBL:HE802919EMBL:HE802921EMBL:HE802923
EnsemblPlants:AT1G32230EnsemblPlants:AT1G32230.1entrez:840115ExpressionAtlas:M5BF30Gene3D:3.90.228.10GeneID:840115GO:GO:0003950
GO:GO:0010193GO:GO:0016032Gramene:AT1G32230.1hmmpanther:PTHR32263hmmpanther:PTHR32263:SF4InterPro:IPR004170InterPro:IPR012317
InterPro:IPR022003OMA:TILAPANPfam:PF00644Pfam:PF12174Pfam:Q8RY59Pfscan:PS50918Pfscan:PS51059
PhylomeDB:M5BF30PROSITE:PS50918PROSITE:PS51059RefSeq:NP_564391.1STRING:3702.AT1G32230.1SUPFAM:SSF56399tair10-symbols:ATP8
tair10-symbols:AtRCD1tair10-symbols:CEOtair10-symbols:CEO1tair10-symbols:RCD1UniGene:At.10171UniProt:M5BF30UniProt:Q8RY59
Coordinates (TAIR10) chr1:+:11613427..11615894
Molecular Weight (calculated) 65700.20 Da
IEP (calculated) 6.46
GRAVY (calculated) -0.48
Length 589 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAKIVKVLD SSRCEDGFGK KRKRAASYAA YVTGVSCAKL QNVPPPNGQC QIPDKRRRLE GENKLSAYEN RSGKALVRYY TYFKKTGIAK RVMMYENGEW
101: NDLPEHVICA IQNELEEKSA AIEFKLCGHS FILDFLHMQR LDMETGAKTP LAWIDNAGKC FFPEIYESDE RTNYCHHKCV EDPKQNAPHD IKLRLEIDVN
201: GGETPRLNLE ECSDESGDNM MDDVPLAQRS SNEHYDEATE DSCSRKLEAA VSKWDETDAI VVSGAKLTGS EVLDKDAVKK MFAVGTASLG HVPVLDVGRF
301: SSEIAEARLA LFQKQVEITK KHRGDANVRY AWLPAKREVL SAVMMQGLGV GGAFIRKSIY GVGIHLTAAD CPYFSARYCD VDENGVRYMV LCRVIMGNME
401: LLRGDKAQFF SGGEEYDNGV DDIESPKNYI VWNINMNTHI FPEFVVRFKL SNLPNAEGNL IAKRDNSGVT LEGPKDLPPQ LESNQGARGS GSANSVGSST
501: TRPKSPWMPF PTLFAAISHK VAENDMLLIN ADYQQLRDKK MTRAEFVRKL RVIVGDDLLR STITTLQNQP KSKEIPGSIR DHEEGAGGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)