AT1G32130.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transcription elongation factor (TFIIS) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
The C-terminal portion of this protein has high homology to the C-termini of the IWS1 (Interacts With Spt6) proteins found in yeast and humans. Interacts with transcription factor BES1. Involved in brassinosteroid-regulated gene expression. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
IWS1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: brassinosteroid mediated signaling pathway, regulation of RNA elongation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923); BEST Arabidopsis thaliana protein match is: Transcription elongation factor (TFIIS) family protein (TAIR:AT4G19000.1); Has 1384 Blast hits to 1350 proteins in 337 species: Archae - 10; Bacteria - 21; Metazoa - 458; Fungi - 242; Plants - 332; Viruses - 8; Other Eukaryotes - 313 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:11559146..11561786 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 57428.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.86 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.11 | ||||||||||||||||||||||||||||||||||||
| Length | 502 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGFEDDPYRD VDGEPIVDFD DFGNDREPST EPLQDFDEDL ADDIGDWDGE GSQTPVYDND KVAKPRKRLV KKSSSERVTI DVPELIDEDV DDAEFDEFMG 101: GRGGGSTDYD DKVGRKRKKE KERSSSGSGK EKRHKFPNRG ERKSEEIDEM WKSIAHNPEN DEEGVRTMDD DNFIDDTGLD PSERYGGDAG DRSPTHYPQA 201: EEGEDEDEVN NLFKMGKKKK KTERNPAEIA LLVENVMAEL EVTAEEDAEL NRQGKPAINK LKKLSLLTDV LGKKQLQTEF LDHGVLTLLK NWLEPLPDGS 301: LPNINIRAAI LRVLTDFPID LDQYDRREQL KKSGLGKVIM FLSKSDEETN SNRRLAKDLV DKWSRPIFNK STRFEDMRNL DEDRVPYRRP PVKKPSNKAT 401: MESRDGDFDL EIRERKTGLT SGQSSRGDRQ MTMRPEATPL DFLIRPQSKI DPDEIIARAK QVSQDQRRVK MNKKLQQLKG TKKKRLQATK VSVEGRGMIK 501: YL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)