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AT1G32030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Domain of unknown function (DUF313)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF313) (TAIR:AT5G24050.1); Has 134 Blast hits to 134 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 130; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JXRDeggNOG:ENOG41103RBEMBL:AB493490EMBL:AC074309
EMBL:CP002684EnsemblPlants:AT1G32030EnsemblPlants:AT1G32030.1entrez:840094
Gene3D:2.40.330.10GeneID:840094Genevisible:Q9C6X0GO:GO:0003677
GO:GO:0005634GO:GO:0006351GO:GO:0006355Gramene:AT1G32030.1
hmmpanther:PTHR31541hmmpanther:PTHR31541:SF22HOGENOM:HOG000155000InParanoid:Q9C6X0
InterPro:IPR003340InterPro:IPR005508InterPro:IPR015300KEGG:ath:AT1G32030
OMA:DISIWSFPaxDb:Q9C6X0Pfam:PF03754Pfam:Q9C6X0
Pfscan:PS50863PhylomeDB:Q9C6X0PIR:E86444PRIDE:Q9C6X0
PRO:PR:Q9C6X0PROSITE:PS50863ProteinModelPortal:Q9C6X0Proteomes:UP000006548
RefSeq:NP_174483.1SUPFAM:SSF101936TAIR:AT1G32030UniGene:At.51869
UniProt:Q9C6X0
Coordinates (TAIR10) chr1:+:11514594..11515595
Molecular Weight (calculated) 37698.60 Da
IEP (calculated) 6.94
GRAVY (calculated) -0.69
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTYYNDHLA AAEKDISSSN FCNLVDASVM LYDEEHRDLL PKKVNSRCQA KTKKQEKESD KRFFDLFPKK RRTSVVTVRN PEQNQQNLHR VSTSSSLLDL
101: NTIPGDSSDP RNELQGLLSS SSSSFLGDYE RKTPQNASSS STLLAEYNTE MANPPNPNSE TSLKRKHSDS EPKKAKTPYS WKGREAPEWL VKMMGTMQGS
201: EGPRLIYEKT LTETDVKPVQ SRLLMPFNTL IRNDFLTPVE LRILLELEDD TDGVGATLVD PWEVKWGVIL KKREMKKYSG KGSLNYAIIC GWNDIVEANV
301: LEKDDDISIW SFRRGRNGIL SFALVLPPPP DMA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)