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AT1G31970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:22318864 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DEA(D/H)-box RNA helicase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
STRESS RESPONSE SUPPRESSOR 1 (STRS1); FUNCTIONS IN: helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT5G63120.2); Has 53114 Blast hits to 49629 proteins in 3238 species: Archae - 911; Bacteria - 25415; Metazoa - 8113; Fungi - 5284; Plants - 3075; Viruses - 103; Other Eukaryotes - 10213 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2272-MONOMERBioGrid:25321EC:3.6.4.13eggNOG:COG0513eggNOG:KOG0331EMBL:AC074309EMBL:AC079041
EMBL:AJ010458EMBL:AY080680EMBL:AY117298EMBL:CP002684EnsemblPlants:AT1G31970EnsemblPlants:AT1G31970.1entrez:840087
Gene3D:3.40.50.300GeneID:840087Genevisible:Q9C551GO:GO:0003723GO:GO:0004004GO:GO:0005524GO:GO:0005730
GO:GO:0005739GO:GO:0005829GO:GO:0006364GO:GO:0010501Gramene:AT1G31970.1hmmpanther:PTHR24031hmmpanther:PTHR24031:SF320
HOGENOM:HOG000268804InParanoid:Q9C551IntAct:Q9C551InterPro:IPR000629InterPro:IPR001650InterPro:IPR011545InterPro:IPR014001
InterPro:IPR014014InterPro:IPR027417iPTMnet:Q9C551KEGG:ath:AT1G31970KO:K14811ncoils:CoilOMA:FRDDVDM
PaxDb:Q9C551Pfam:PF00270Pfam:PF00271Pfam:Q9C551Pfscan:PS51192Pfscan:PS51194Pfscan:PS51195
PhylomeDB:Q9C551PIR:A86444PIR:T51739PRIDE:Q9C551PRO:PR:Q9C551PROSITE:PS00039PROSITE:PS51192
PROSITE:PS51194PROSITE:PS51195ProteinModelPortal:Q9C551Proteomes:UP000006548RefSeq:NP_174479.1scanprosite:PS00039SMART:SM00487
SMART:SM00490SMR:Q9C551STRING:3702.AT1G31970.1SUPFAM:SSF52540TAIR:AT1G31970tair10-symbols:STRS1UniGene:At.20258
UniProt:Q9C551
Coordinates (TAIR10) chr1:+:11479921..11482707
Molecular Weight (calculated) 59606.80 Da
IEP (calculated) 8.89
GRAVY (calculated) -0.47
Length 537 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGQKQELPV SGEPLAVESP MTNKKKKKSK KNKHTEENHE VEEVPQEVTN GVEEELSNKE KKKKRKREEK ESEKNKKKDV PEKKLEAEDL GEGESEQQKV
101: VVTGKGVEEA KYAALKTFAE SNLPENVLDC CKTFEKPSPI QSHTWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHVLKKN KKIGGGSKKV NPTCLVLSPT
201: RELAVQISDV LREAGEPCGL KSICVYGGSS KGPQISAIRS GVDIVIGTPG RLRDLIESNV LRLSDVSFVV LDEADRMLDM GFEEPVRFIL SNTNKVRQMV
301: MFSATWPLDV HKLAQEFMDP NPIKVIIGSV DLAANHDVMQ IIEVLDERAR DQRLIALLEK YHKSQKNRVL VFALYKVEAE RLERFLQQRG WKAVSIHGNK
401: AQSERTRSLS LFKEGSCPLL VATDVAARGL DIPDVEVVIN YTFPLTTEDY VHRIGRTGRA GKKGVAHTFF TPLNKGLAGE LVNVLREAGQ VVPADLLKFG
501: THVKKKESKL YGAHFKEIAA DAPKATKITF DNSDDED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)